A modern approach for epitope prediction: identification of foot-and-mouth disease virus peptides binding bovine leukocyte antigen (BoLA) class I molecules

BoLA-6*01301 and BoLA-6*01302, two allelic variants of the A18 haplotype, present the same epitope from the Tp1 antigen of Theileria parva

(2015) N. Svitek et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Lessons from Reverse Vaccinology for viral vaccine design

(2015) Luca Bruno et al.   Current Opinion in Virology

Characterization of binding specificities of bovine leucocyte class I molecules: impacts for rational epitope discovery

(2014) Andreas M. Hansen et al.   IMMUNOGENETICS

Uncovering the Peptide-Binding Specificities of HLA-C: A General Strategy To Determine the Specificity of Any MHC Class I Molecule

(2014) Michael Rasmussen et al.   JOURNAL OF IMMUNOLOGY

In silico peptide-binding predictions of passerine MHC class I reveal similarities across distantly related species, suggesting convergence on the level of protein function

(2013) Elna Follin et al.   IMMUNOGENETICS

MHCcluster, a method for functional clustering of MHC molecules

(2013) Martin Thomsen et al.   IMMUNOGENETICS

Characterization of Cytotoxic T Lymphocyte Function After Foot-and-Mouth Disease Virus Infection and Vaccination

(2013) Jared R. Patch et al.   VIRAL IMMUNOLOGY

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity

(2013) Jorg J. A. Calis et al.   PLoS Computational Biology

Identification of peptides from foot-and-mouth disease virus structural proteins bound by class I swine leukocyte antigen (SLA) alleles, SLA-1*0401 and SLA-2*0401

(2012) L. E. Pedersen et al.   ANIMAL GENETICS

Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

(2012) Mikkel Harndahl et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

(2012) Martin Christen Frølund Thomsen et al.   NUCLEIC ACIDS RESEARCH

Designing bovine T cell vaccines via reverse immunology

(2012) Vishvanath Nene et al.   Ticks and Tick-Borne Diseases

Extensive Polymorphism and Evidence of Immune Selection in a Highly Dominant Antigen Recognized by Bovine CD8 T Cells Specific for Theileria annulata

(2011) Niall D. MacHugh et al.   INFECTION AND IMMUNITY

Two Distinct Conformations of a Rinderpest Virus Epitope Presented by Bovine Major Histocompatibility Complex Class I N*01801: a Host Strategy To Present Featured Peptides

(2011) X. Li et al.   JOURNAL OF VIROLOGY

Induction of Foot-and-Mouth Disease Virus-Specific Cytotoxic T Cell Killing by Vaccination

(2010) Jared R. Patch et al.   Clinical and Vaccine Immunology

HLArestrictor—a tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides

(2010) Malene Erup Larsen et al.   IMMUNOGENETICS

High Throughput T Epitope Mapping and Vaccine Development

(2010) Giuseppina Li Pira et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Real-time, high-throughput measurements of peptide–MHC-I dissociation using a scintillation proximity assay

(2010) Mikkel Harndahl et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Induction of a Cross-Reactive CD8+ T Cell Response following Foot-and-Mouth Disease Virus Vaccination

(2010) E. Guzman et al.   JOURNAL OF VIROLOGY

MHC Class I Bound to an Immunodominant Theileria parva Epitope Demonstrates Unconventional Presentation to T Cell Receptors

(2010) Isabel K. Macdonald et al.   PLoS Pathogens

Adenovirus serotype 5-vectored foot-and-mouth disease subunit vaccines: the first decade

(2009) Marvin J Grubman et al.   Future Virology

HLA class I supertypes: a revised and updated classification

(2008) John Sidney et al.   BMC IMMUNOLOGY

NetMHCpan, a method for MHC class I binding prediction beyond humans

(2008) Ilka Hoof et al.   IMMUNOGENETICS

An MHC-restricted CD8+ T-cell response is induced in cattle by foot-and-mouth disease virus (FMDV) infection and also following vaccination with inactivated FMDV

(2008) E. Guzman et al.   JOURNAL OF GENERAL VIROLOGY

Amino Acid Similarity Accounts for T Cell Cross-Reactivity and for “Holes” in the T Cell Repertoire

(2008) Sune Frankild et al.   PLoS One

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan

(2008) Morten Nielsen et al.   PLoS Computational Biology