Variation and constraints in hybrid genome formation

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

The genomic mosaicism of hybrid speciation

(2017) Tore O. Elgvin et al.   Science Advances

Wnt/β-catenin signaling pathway activates melanocyte stem cells in vitro and in vivo

(2016) Haiying Guo et al.   JOURNAL OF DERMATOLOGICAL SCIENCE

Determining epistatic selection in admixed populations

(2016) Molly Schumer et al.   MOLECULAR ECOLOGY

Evolutionary signals of selection on cognition from the great tit genome and methylome

(2016) Veronika N. Laine et al.   Nature Communications

Fitchi: haplotype genealogy graphs based on the Fitch algorithm

(2015) Michael Matschiner   BIOINFORMATICS

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers

(2015) Reto Burri et al.   GENOME RESEARCH

Transcriptomics of colour patterning and coloration shifts in crows

(2015) J. W. Poelstra et al.   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hybrid speciation through sorting of parental incompatibilities in Italian sparrows

(2014) Jo S. Hermansen et al.   MOLECULAR ECOLOGY

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Evidence for Mito-Nuclear and Sex-Linked Reproductive Barriers between the Hybrid Italian Sparrow and Its Parent Species

(2014) Cassandra N. Trier et al.   PLoS Genetics

Unsupervised genome-wide recognition of local relationship patterns

(2013) Neda Zamani et al.   BMC GENOMICS

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

Local adaptation within a hybrid species

(2013) F Eroukhmanoff et al.   HEREDITY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Single origin of human commensalism in the house sparrow

(2012) G.-P. SAETRE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hybrid speciation in sparrows I: phenotypic intermediacy, genetic admixture and barriers to gene flow

(2011) JO S. HERMANSEN et al.   MOLECULAR ECOLOGY

MitoMiner: a data warehouse for mitochondrial proteomics data

(2011) A. C. Smith et al.   NUCLEIC ACIDS RESEARCH

Simultaneous and selective inference: Current successes and future challenges

(2010) Yoav Benjamini   BIOMETRICAL JOURNAL

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Faster-Z Evolution Is Predominantly Due to Genetic Drift

(2009) J. E. Mank et al.   MOLECULAR BIOLOGY AND EVOLUTION

Olfactomedin Domain-Containing Proteins: Possible Mechanisms of Action and Functions in Normal Development and Pathology

(2009) Stanislav I. Tomarev et al.   MOLECULAR NEUROBIOLOGY

Speciation through evolution of sex-linked genes

(2008) A Qvarnström et al.   HEREDITY

The role of hybridization in evolution

(2003) N. H. Barton   MOLECULAR ECOLOGY