KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples

Bacterial colonization and succession in a newly opened hospital

(2017) Simon Lax et al.   Science Translational Medicine

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

The roles of the outdoors and occupants in contributing to a potential pan-microbiome of the built environment: a review

(2016) Marcus H. Y. Leung et al.   Microbiome

From Sample to Multi-Omics Conclusions in under 48 Hours

(2016) Robert A. Quinn et al.   mSystems

Molecular cartography of the human skin surface in 3D

(2015) Amina Bouslimani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks

(2015) W B Langdon   BioData Mining

Potential NICU Environmental Influences on the Neonateʼs Microbiome

(2015) Lacey E. Hartz et al.   Advances in Neonatal Care

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Cleanroom Maintenance Significantly Reduces Abundance but Not Diversity of Indoor Microbiomes

(2015) Alexander Mahnert et al.   PLoS One

Ragout--a reference-assisted assembly tool for bacterial genomes

(2014) M. Kolmogorov et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Improved Multiple Displacement Amplification (iMDA) and Ultraclean Reagents

(2014) S Motley et al.   BMC GENOMICS

Characterizing airborne fungal and bacterial concentrations and emission rates in six occupied children's classrooms

(2014) D. Hospodsky et al.   INDOOR AIR

Microbial Existence in Controlled Habitats and Their Resistance to Space Conditions

(2014) Kasthuri Venkateswaran et al.   MICROBES AND ENVIRONMENTS

Longitudinal analysis of microbial interaction between humans and the indoor environment

(2014) S. Lax et al.   SCIENCE

New Vibrio species associated to molluscan microbiota: a review

(2014) Jesús L. Romalde et al.   Frontiers in Microbiology

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

(2014) Brandon Brooks et al.   Microbiome

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Architectural design influences the diversity and structure of the built environment microbiome

(2012) Steven W Kembel et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Forensic identification using skin bacterial communities

(2010) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and pathogenecity of Vibrio species in cultured bivalve molluscs

(2010) Roxana Beaz-Hidalgo et al.   Environmental Microbiology Reports

Microbial contamination of nonsterile pharmaceuticals in public hospital settings

(2010) Veronica Mugoyela et al.   Therapeutics and Clinical Risk Management

UV irradiation and autoclave treatment for elimination of contaminating DNA from laboratory consumables

(2009) Lisa A. Gefrides et al.   Forensic Science International-Genetics