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Single-cell DNA methylome sequencing of human preimplantation embryos

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Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA

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Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation

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Genome-wide DNA methylation analysis of transient neonatal diabetes type 1 patients with mutations in ZFP57

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Detection of differential DNA methylation in repetitive DNA of mice and humans perinatally exposed to bisphenol A

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Is famine exposure during developmental life in rural Bangladesh associated with a metabolic and epigenetic signature in young adulthood? A historical cohort study

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Early gestation as the critical time-window for changes in the prenatal environment to affect the adult human blood methylome

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Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

Human body epigenome maps reveal noncanonical DNA methylation variation

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Genetic and epigenetic variation among inbred mouse littermates: identification of inter-individual differentially methylated regions

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Independent genomewide screens identify the tumor suppressor VTRNA2-1 as a human epiallele responsive to periconceptional environment

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Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression

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Reprogramming the Methylome: Erasing Memory and Creating Diversity

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The effect of genotype and in utero environment on interindividual variation in neonate DNA methylomes

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DNA methylation dynamics of the human preimplantation embryo

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The DNA methylation landscape of human early embryos

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Maternal nutrition at conception modulates DNA methylation of human metastable epialleles

(2014) Paula Dominguez-Salas et al.   Nature Communications

Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development

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DNA methylation potential: dietary intake and blood concentrations of one-carbon metabolites and cofactors in rural African women

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Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies

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ChromHMM: automating chromatin-state discovery and characterization

(2012) Jason Ernst et al.   NATURE METHODS

A randomized trial to investigate the effects of pre-natal and infant nutritional supplementation on infant immune development in rural Gambia: the ENID trial: Early Nutrition and Immune Development

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An Alu Element–Associated Hypermethylation Variant of the POMC Gene Is Associated with Childhood Obesity

(2012) Peter Kuehnen et al.   PLoS Genetics

Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data

(2012) Yaping Liu et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

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In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions

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Genomic imprinting: the emergence of an epigenetic paradigm

(2011) Anne C. Ferguson-Smith   NATURE REVIEWS GENETICS

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Season of Conception in Rural Gambia Affects DNA Methylation at Putative Human Metastable Epialleles

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Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease

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In Utero and Early-Life Conditions and Adult Health and Disease

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