FSPP: A Tool for Genome-Wide Prediction of smORF-Encoded Peptides and Their Functions
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Title
FSPP: A Tool for Genome-Wide Prediction of smORF-Encoded Peptides and Their Functions
Authors
Keywords
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Journal
Frontiers in Genetics
Volume 9, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2018-04-05
DOI
10.3389/fgene.2018.00096
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- (2016) Juan Antonio Vizcaíno et al. NUCLEIC ACIDS RESEARCH
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- (2015) Douglas M. Anderson et al. CELL
- Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium
- (2015) M. Lluch-Senar et al. Molecular Systems Biology
- Detecting actively translated open reading frames in ribosome profiling data
- (2015) Lorenzo Calviello et al. NATURE METHODS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
- (2014) A. A. Bazzini et al. EMBO JOURNAL
- Emerging evidence for functional peptides encoded by short open reading frames
- (2014) Shea J. Andrews et al. NATURE REVIEWS GENETICS
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- (2013) Brian A. Risk et al. JOURNAL OF PROTEOME RESEARCH
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