- Home
- Publications
- Publication Search
- Publication Details
Title
Classification and function of small open reading frames
Authors
Keywords
-
Journal
NATURE REVIEWS MOLECULAR CELL BIOLOGY
Volume 18, Issue 9, Pages 575-589
Publisher
Springer Nature
Online
2017-07-12
DOI
10.1038/nrm.2017.58
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Secondary structure impacts patterns of selection in human lncRNAs
- (2016) Cinta Pegueroles et al. BMC BIOLOGY
- Upstream ORFs are prevalent translational repressors in vertebrates
- (2016) Timothy G Johnstone et al. EMBO JOURNAL
- Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution
- (2016) Bryan A. Moyers et al. MOLECULAR BIOLOGY AND EVOLUTION
- A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle
- (2016) B. R. Nelson et al. SCIENCE
- New Peptides Under the s(ORF)ace of the Genome
- (2016) Jose I. Pueyo et al. TRENDS IN BIOCHEMICAL SCIENCES
- Hemotin, a Regulator of Phagocytosis Encoded by a Small ORF and Conserved across Metazoans
- (2016) José I. Pueyo et al. PLOS BIOLOGY
- MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis
- (2016) Moritz Graeff et al. PLoS Genetics
- Global Intersection of Long Non-Coding RNAs with Processed and Unprocessed Pseudogenes in the Human Genome
- (2016) Michael J. Milligan et al. Frontiers in Genetics
- DRAMP: a comprehensive data repository of antimicrobial peptides
- (2016) Linlin Fan et al. Scientific Reports
- Ribosomal profiling adds new coding sequences to the proteome
- (2015) M. A. S. Mumtaz et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance
- (2015) Douglas M. Anderson et al. CELL
- The Mitochondrial-Derived Peptide MOTS-c Promotes Metabolic Homeostasis and Reduces Obesity and Insulin Resistance
- (2015) Changhan Lee et al. Cell Metabolism
- Rat Humanin is encoded and translated in mitochondria and is localized to the mitochondrial compartment where it regulates ROS production
- (2015) Vladislava Paharkova et al. MOLECULAR AND CELLULAR ENDOCRINOLOGY
- Primary transcripts of microRNAs encode regulatory peptides
- (2015) Dominique Lauressergues et al. NATURE
- Discovery and characterization of smORF-encoded bioactive polypeptides
- (2015) Alan Saghatelian et al. Nature Chemical Biology
- Identification of novel Arabidopsis thaliana upstream open reading frames that control expression of the main coding sequences in a peptide sequence-dependent manner
- (2015) Isao Ebina et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2016
- (2015) Andrew Yates et al. NUCLEIC ACIDS RESEARCH
- Pri sORF peptides induce selective proteasome-mediated protein processing
- (2015) J. Zanet et al. SCIENCE
- Genes from scratch – the evolutionary fate of de novo genes
- (2015) Christian Schlötterer TRENDS IN GENETICS
- Partial protein domains: evolutionary insights and bioinformatics challenges
- (2015) Lawrence A Kelley et al. GENOME BIOLOGY
- Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
- (2014) A. A. Bazzini et al. EMBO JOURNAL
- A Human Short Open Reading Frame (sORF)-encoded Polypeptide That Stimulates DNA End Joining
- (2014) Sarah A. Slavoff et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Discovery of Human sORF-Encoded Polypeptides (SEPs) in Cell Lines and Tissue
- (2014) Jiao Ma et al. JOURNAL OF PROTEOME RESEARCH
- Emerging evidence for functional peptides encoded by short open reading frames
- (2014) Shea J. Andrews et al. NATURE REVIEWS GENETICS
- The translational landscape of fission-yeast meiosis and sporulation
- (2014) Caia D S Duncan et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Small cationic antimicrobial peptides delocalize peripheral membrane proteins
- (2014) M. Wenzel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Origin and Spread of de Novo Genes in Drosophila melanogaster Populations
- (2014) L. Zhao et al. SCIENCE
- Toddler: An Embryonic Signal That Promotes Cell Movement via Apelin Receptors
- (2014) A. Pauli et al. SCIENCE
- Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
- (2014) Nicholas T. Ingolia et al. Cell Reports
- Translation of Small Open Reading Frames within Unannotated RNA Transcripts in Saccharomyces cerevisiae
- (2014) Jenna E. Smith et al. Cell Reports
- Widespread Changes in the Posttranscriptional Landscape at the Drosophila Oocyte-to-Embryo Transition
- (2014) Iva Kronja et al. Cell Reports
- Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq
- (2014) Julie L Aspden et al. eLife
- Long non-coding RNAs as a source of new peptides
- (2014) Jorge Ruiz-Orera et al. eLife
- Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes
- (2014) Sebastiaan van Heesch et al. GENOME BIOLOGY
- Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
- (2013) Rafik Neme et al. BMC GENOMICS
- Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs
- (2013) Jeroen Crappé et al. BMC GENOMICS
- Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
- (2013) Mitchell Guttman et al. CELL
- Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs
- (2013) Guo-Liang Chew et al. DEVELOPMENT
- ELABELA: A Hormone Essential for Heart Development Signals via the Apelin Receptor
- (2013) Serene C. Chng et al. DEVELOPMENTAL CELL
- Integration of New Genes into Cellular Networks, and Their Structural Maturation
- (2013) G. Abrusan GENETICS
- Long non-coding RNAs: new players in cell differentiation and development
- (2013) Alessandro Fatica et al. NATURE REVIEWS GENETICS
- Small open reading frames associated with morphogenesis are hidden in plant genomes
- (2013) K. Hanada et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames
- (2013) E. G. Magny et al. SCIENCE
- De Novo ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences
- (2013) Josephine A. Reinhardt et al. PLoS Genetics
- Long noncoding RNAs are rarely translated in two human cell lines
- (2012) B. Banfai et al. GENOME RESEARCH
- Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting
- (2012) C. Fritsch et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- Proto-genes and de novo gene birth
- (2012) Anne-Ruxandra Carvunis et al. NATURE
- Modular regulatory principles of large non-coding RNAs
- (2012) Mitchell Guttman et al. NATURE
- Peptidomic discovery of short open reading frame–encoded peptides in human cells
- (2012) Sarah A Slavoff et al. Nature Chemical Biology
- Mitochondrial dynamics in neurodegeneration
- (2012) Kie Itoh et al. TRENDS IN CELL BIOLOGY
- Hominoid-Specific De Novo Protein-Coding Genes Originating from Long Non-Coding RNAs
- (2012) Chen Xie et al. PLoS Genetics
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- Tarsal-less peptides control Notch signalling through the Shavenbaby transcription factor
- (2011) Jose I. Pueyo et al. DEVELOPMENTAL BIOLOGY
- Notch Ligand Ubiquitylation: What Is It Good For?
- (2011) Gerry Weinmaster et al. DEVELOPMENTAL CELL
- Competitive inhibition of transcription factors by small interfering peptides
- (2011) Pil Joon Seo et al. TRENDS IN PLANT SCIENCE
- Hundreds of putatively functional small open reading frames in Drosophila
- (2011) Emmanuel Ladoukakis et al. GENOME BIOLOGY
- Regulation of protein function by ‘microProteins’
- (2010) Annica-Carolin Staudt et al. EMBO REPORTS
- Ubiquitin-like protein activation by E1 enzymes: the apex for downstream signalling pathways
- (2009) Brenda A. Schulman et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster
- (2009) Zheng Li et al. NUCLEIC ACIDS RESEARCH
- The Evolutionary History of Protein Domains Viewed by Species Phylogeny
- (2009) Song Yang et al. PLoS One
- Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
- (2009) S. E. Calvo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Targeting lipophilic cations to mitochondria
- (2008) Michael P. Murphy BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- The 11-aminoacid long Tarsal-less peptides trigger a cell signal in Drosophila leg development
- (2008) Jose Ignacio Pueyo et al. DEVELOPMENTAL BIOLOGY
- Trans-regulation of the expression of the transcription factor MtHAP2-1 by a uORF controls root nodule development
- (2008) J. P. Combier et al. GENES & DEVELOPMENT
- eIF3a cooperates with sequences 5' of uORF1 to promote resumption of scanning by post-termination ribosomes for reinitiation on GCN4 mRNA
- (2008) B. Szamecz et al. GENES & DEVELOPMENT
- On the origin of new genes in Drosophila
- (2008) Q. Zhou et al. GENOME RESEARCH
- Reassessing the amyloid cascade hypothesis of Alzheimer's disease
- (2008) Sanjay W. Pimplikar INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Small membrane proteins found by comparative genomics and ribosome binding site models
- (2008) Matthew R. Hemm et al. MOLECULAR MICROBIOLOGY
- Translational control of intron splicing in eukaryotes
- (2008) Olivier Jaillon et al. NATURE
- Drosophila Pgc protein inhibits P-TEFb recruitment to chromatin in primordial germ cells
- (2008) Kazuko Hanyu-Nakamura et al. NATURE
- Predicting cell-penetrating peptides
- (2007) Mats Hansen et al. ADVANCED DRUG DELIVERY REVIEWS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started