The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome

(2017) Brandon Brooks et al.   Nature Communications

Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants

(2017) Christopher J. Stewart et al.   Frontiers in Microbiology

Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR

(2016) Vladimir Lazarevic et al.   BMC MICROBIOLOGY

Pilot study of sources and concentrations of size-resolved airborne particles in a neonatal intensive care unit

(2016) Seema Bhangar et al.   BUILDING AND ENVIRONMENT

Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants

(2016) Tali Raveh-Sadka et al.   ISME Journal

Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics

(2016) Juan Jovel et al.   Frontiers in Microbiology

Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome

(2016) Molly K. Gibson et al.   Nature Microbiology

Geography and Location Are the Primary Drivers of Office Microbiome Composition

(2016) John Chase et al.   mSystems

Gut Microbiome Developmental Patterns in Early Life of Preterm Infants: Impacts of Feeding and Gender

(2016) Xiaomei Cong et al.   PLoS One

Concentrations and Sources of Airborne Particles in a Neonatal Intensive Care Unit

(2016) Dusan Licina et al.   PLoS One

Reconstructing 16S rRNA genes in metagenomic data

(2015) Cheng Yuan et al.   BIOINFORMATICS

Intensive care unit environmental surfaces are contaminated by multidrug-resistant bacteria in biofilms: combined results of conventional culture, pyrosequencing, scanning electron microscopy, and confocal laser microscopy

(2015) H. Hu et al.   JOURNAL OF HOSPITAL INFECTION

Early infancy microbial and metabolic alterations affect risk of childhood asthma

(2015) Marie-Claire Arrieta et al.   Science Translational Medicine

Comparative efficacy of interventions to promote hand hygiene in hospital: systematic review and network meta-analysis

(2015) Nantasit Luangasanatip et al.   BMJ-British Medical Journal

Comparative efficacy of interventions to promote hand hygiene in hospital: systematic review and network meta-analysis

(2015) Nantasit Luangasanatip et al.   BMJ-British Medical Journal

Humans differ in their personal microbial cloud

(2015) James F. Meadow et al.   PeerJ

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

Architectural Design Drives the Biogeography of Indoor Bacterial Communities

(2014) Steven W. Kembel et al.   PLoS One

Development of the preterm infant gut microbiome: a research priority

(2014) Maureen W Groer et al.   Microbiome

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform

(2014) Douglas W Fadrosh et al.   Microbiome

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

(2014) Brandon Brooks et al.   Microbiome

Intestinal Microbial Diversity during Early-Life Colonization Shapes Long-Term IgE Levels

(2013) Julia Cahenzli et al.   Cell Host & Microbe

Surface Microbes in the Neonatal Intensive Care Unit: Changes with Routine Cleaning and over Time

(2013) N. A. Bokulich et al.   JOURNAL OF CLINICAL MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Architectural design influences the diversity and structure of the built environment microbiome

(2012) Steven W Kembel et al.   ISME Journal

Assessing allergenic fungi in house dust by floor wipe sampling and quantitative PCR

(2011) N. Yamamoto et al.   INDOOR AIR

Effect of higher minimum inhibitory concentrations of quaternary ammonium compounds in clinical E. coli isolates on antibiotic susceptibilities and clinical outcomes

(2011) S. Buffet-Bataillon et al.   JOURNAL OF HOSPITAL INFECTION

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Biofilm Formation by and Multicellular Behavior of Escherichia coli O55:H7, an Atypical Enteropathogenic Strain

(2010) M. Weiss-Muszkat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Measurements of Airborne Influenza Virus in Aerosol Particles from Human Coughs

(2010) William G. Lindsley et al.   PLoS One