Effects of Propidium Monoazide (PMA) Treatment on Mycobiome and Bacteriome Analysis of Cystic Fibrosis Airways during Exacerbation

Environment and Colonisation Sequence Are Key Parameters Driving Cooperation and Competition between Pseudomonas aeruginosa Cystic Fibrosis Strains and Oral Commensal Streptococci

(2015) Robert A. Whiley et al.   PLoS One

Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome

(2015) Arvind Venkataraman et al.   mBio

Quantification ofPseudomonas aeruginosain multispecies biofilms using PMA-qPCR

(2015) Sarah Tavernier et al.   PeerJ

International Space Station environmental microbiome — microbial inventories of ISS filter debris

(2014) Kasthuri Venkateswaran et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Development and antimicrobial susceptibility studies of in vitro monomicrobial and polymicrobial biofilm models with Aspergillus fumigatus and Pseudomonas aeruginosa

(2014) Elias K Manavathu et al.   BMC MICROBIOLOGY

The effect of propidium monoazide treatment on the measured bacterial composition of clinical samples after the use of a mouthwash

(2014) R. A. M. Exterkate et al.   Clinical Oral Investigations

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Differential Resistance of Drinking Water Bacterial Populations to Monochloramine Disinfection.

(2014) Tzu-Hsin Chiao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation

(2014) Katrine L Whiteson et al.   ISME Journal

Diversity of rare and abundant bacteria in surface waters of the Southern Adriatic Sea

(2014) Grazia Marina Quero et al.   Marine Genomics

Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis

(2014) Sven D Willger et al.   Microbiome

Differences in fungi present in induced sputum samples from asthma patients and non-atopic controls: a community based case control study

(2013) Hugo Cornelis van Woerden et al.   BMC INFECTIOUS DISEASES

Streptococcal co-infection augmentsCandidapathogenicity by amplifying the mucosal inflammatory response

(2013) H. Xu et al.   CELLULAR MICROBIOLOGY

Novel immunologic classification of aspergillosis in adult cystic fibrosis

(2013) Caroline G. Baxter et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Candida albicans and Pseudomonas aeruginosa interactions: More than an opportunistic criminal association?

(2013) J.-B. Méar et al.   MEDECINE ET MALADIES INFECTIEUSES

Is the Improvement of CF Patients, Hospitalized for Pulmonary Exacerbation, Correlated to a Decrease in Bacterial Load?

(2013) Pieter Deschaght et al.   PLoS One

Update in Cystic Fibrosis 2011

(2012) Felix Ratjen et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Lung-enriched Organisms and Aberrant Bacterial and Fungal Respiratory Microbiota after Lung Transplant

(2012) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Viable quantitative PCR for assessing the response of Candida albicans to antifungal treatment

(2012) Gemma Agustí et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

(2012) Jean-François Mangot et al.   ENVIRONMENTAL MICROBIOLOGY

Prevalence of Streptococci and Increased Polymicrobial Diversity Associated with Cystic Fibrosis Patient Stability

(2012) L. M. Filkins et al.   JOURNAL OF BACTERIOLOGY

Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification

(2012) Mariana Fittipaldi et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The Airway Microbiota in Cystic Fibrosis: A Complex Fungal and Bacterial Community—Implications for Therapeutic Management

(2012) Laurence Delhaes et al.   PLoS One

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota

(2012) A. F. Goddard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decade-long bacterial community dynamics in cystic fibrosis airways

(2012) J. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time

(2011) Yunpeng Cai et al.   NUCLEIC ACIDS RESEARCH

Comparison of culture and qPCR for the detection of Pseudomonas aeruginosa in not chronically infected cystic fibrosis patients

(2010) Pieter Deschaght et al.   BMC MICROBIOLOGY

Pseudomonas aeruginosabiofilms in cystic fibrosis

(2010) Niels Høiby et al.   Future Microbiology

Medically important bacterial–fungal interactions

(2010) Anton Y. Peleg et al.   NATURE REVIEWS MICROBIOLOGY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Candida albicans impairs macrophage function and facilitates Pseudomonas aeruginosa pneumonia in rat*

(2009) Damien Roux et al.   CRITICAL CARE MEDICINE

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing the diagnostic importance of nonviable bacterial cells in respiratory infections

(2008) Geraint B. Rogers et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Diagnosis of invasive aspergillosis using bronchoalveolar lavage in haematology patients: influence of bronchoalveolar lavage human DNA content on real-time PCR performance

(2008) E. Fréalle et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Quantifying fungal viability in air and water samples using quantitative PCR after treatment with propidium monoazide (PMA)

(2007) Stephen Vesper et al.   JOURNAL OF MICROBIOLOGICAL METHODS