“Candidatus Paraporphyromonas polyenzymogenes” encodes multi-modular cellulases linked to the type IX secretion system

Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-degrading capacity

(2017) Magnus Ø. Arntzen et al.   ENVIRONMENTAL MICROBIOLOGY

Polysaccharide Utilization Loci: Fueling Microbial Communities

(2017) Julie M. Grondin et al.   JOURNAL OF BACTERIOLOGY

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Metabolic networks for nitrogen utilization in Prevotella ruminicola 23

(2017) Jong Nam Kim et al.   Scientific Reports

Periplasmic Cytophaga hutchinsonii Endoglucanases Are Required for Use of Crystalline Cellulose as the Sole Source of Carbon and Energy

(2016) Yongtao Zhu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins

(2016) Konstantinos D. Tsirigos et al.   BIOINFORMATICS

A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin

(2016) Johan Larsbrink et al.   Biotechnology for Biofuels

Natural diversity of cellulases, xylanases, and chitinases in bacteria

(2016) Darrian Talamantes et al.   Biotechnology for Biofuels

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

The outer-membrane export signal of Porphyromonas gingivalis type IX secretion system (T9SS) is a conserved C-terminal β-sandwich domain

(2016) Iñaki de Diego et al.   Scientific Reports

Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals

(2016) Kate L. Ormerod et al.   Microbiome

Identification of protein secretion systems in bacterial genomes

(2016) Sophie S. Abby et al.   Scientific Reports

Expression and characteristics of a Ca2+-dependent endoglucanase from Cytophaga hutchinsonii

(2015) Cong Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Outer membrane proteins related to SusC and SusD are not required for Cytophaga hutchinsonii cellulose utilization

(2015) Yongtao Zhu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Flavobacterium gliding motility and the type IX secretion system

(2015) Mark J McBride et al.   CURRENT OPINION IN MICROBIOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Structural Features of a Bacteroidetes-Affiliated Cellulase Linked with a Polysaccharide Utilization Locus

(2015) A.E. Naas et al.   Scientific Reports

Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85

(2015) Meagan C. Burnet et al.   PLoS One

Characterization of a multi-function processive endoglucanase CHU_2103 from Cytophaga hutchinsonii

(2014) Cong Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Inference of phenotype-defining functional modules of protein families for microbial plant biomass degraders

(2014) Sebastian GA Konietzny et al.   Biotechnology for Biofuels

Flavobacterium johnsoniae PorV Is Required for Secretion of a Subset of Proteins Targeted to the Type IX Secretion System

(2014) Sampada S. Kharade et al.   JOURNAL OF BACTERIOLOGY

Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes

(2014) Carly P. Rosewarne et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Decision making inxia2

(2013) Graeme Winter et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The Genome of the Anaerobic Fungus Orpinomyces sp. Strain C1A Reveals the Unique Evolutionary History of a Remarkable Plant Biomass Degrader

(2013) Noha H. Youssef et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Deletion of the Cytophaga hutchinsonii type IX secretion system gene sprP results in defects in gliding motility and cellulose utilization

(2013) Yongtao Zhu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes

(2013) Aaron Weimann et al.   Biotechnology for Biofuels

Flavobacterium johnsoniae Chitinase ChiA Is Required for Chitin Utilization and Is Secreted by the Type IX Secretion System

(2013) S. S. Kharade et al.   JOURNAL OF BACTERIOLOGY

IMG/M 4 version of the integrated metagenome comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Insights into the Carbohydrate-Active Enzymes Carried by the Microorganisms Adhering to Solid Digesta in the Rumen of Cows

(2013) Lingling Wang et al.   PLoS One

Revealing Nature's Cellulase Diversity: The Digestion Mechanism of Caldicellulosiruptor bescii CelA

(2013) R. Brunecky et al.   SCIENCE

Characterization of a family 5 glycoside hydrolase isolated from the outer membrane of cellulolytic Cytophaga hutchinsonii

(2012) Yongtao Zhu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Novel enzymes for the degradation of cellulose

(2012) Svein Horn et al.   Biotechnology for Biofuels

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

(2012) Henrik Aspeborg et al.   BMC EVOLUTIONARY BIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

iMOSFLM: a new graphical interface for diffraction-image processing withMOSFLM

(2011) T. Geoff G. Battye et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Dissecting structure–function–stability relationships of a thermostable GH5-CBM3 cellulase fromBacillus subtilis168

(2011) Camila R. Santos et al.   BIOCHEMICAL JOURNAL

How recombinant swollenin from Kluyveromyces lactis affects cellulosic substrates and accelerates their hydrolysis

(2011) Gernot Jäger et al.   Biotechnology for Biofuels

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells

(2011) Yuexi Wang et al.   PROTEOMICS

Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies

(2011) P. B. Pope et al.   SCIENCE

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Chemical profiles of switchgrass

(2010) Zhoujian Hu et al.   BIORESOURCE TECHNOLOGY

Invited review: Ruminant ecology and evolution: Perspectives useful to ruminant livestock research and production

(2010) T.J. Hackmann et al.   JOURNAL OF DAIRY SCIENCE

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A protein secretion system linked to bacteroidete gliding motility and pathogenesis

(2009) K. Sato et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From cellulosomes to cellulosomics

(2008) Edward A. Bayer et al.   CHEMICAL RECORD

Unique aspects of the grass cell wall

(2008) J VOGEL   CURRENT OPINION IN PLANT BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY