Ammonia-oxidizing bacteria and archaea within biofilters of a commercial recirculating marine aquaculture system

Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira

(2017) Ryan P. Bartelme et al.   Frontiers in Microbiology

Metagenomic analysis shows diverse, distinct bacterial communities in biofilters among different marine recirculating aquaculture systems

(2016) Zhitao Huang et al.   AQUACULTURE INTERNATIONAL

Uncultured bacterial diversity in a seawater recirculating aquaculture system revealed by 16S rRNA gene amplicon sequencing

(2016) Da-Eun Lee et al.   JOURNAL OF MICROBIOLOGY

Nitrification at different salinities: Biofilm community composition and physiological plasticity

(2016) Blanca M. Gonzalez-Silva et al.   WATER RESEARCH

Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation

(2015) Barbara Bayer et al.   ISME Journal

Nitrosomonas stercoris sp. nov., a Chemoautotrophic Ammonia-Oxidizing Bacterium Tolerant of High Ammonium Isolated from Composted Cattle Manure

(2015) Tatsunori Nakagawa et al.   MICROBES AND ENVIRONMENTS

Bacterial Community Analysis of Different Sections of a Biofilter in a Full-Scale Marine Recirculating Aquaculture System

(2015) Yun-Jie Ruan et al.   NORTH AMERICAN JOURNAL OF AQUACULTURE

Identification of Bacterial Community Composition in Freshwater Aquaculture System Farming of Litopenaeus vannamei Reveals Distinct Temperature-Driven Patterns

(2014) Yuyi Tang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota

(2014) M. Stieglmeier et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genomes of Two New Ammonia-Oxidizing Archaea Enriched from Deep Marine Sediments

(2014) Soo-Je Park et al.   PLoS One

Temporal and Spatial Stability of Ammonia-Oxidizing Archaea and Bacteria in Aquarium Biofilters

(2014) Samik Bagchi et al.   PLoS One

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation

(2014) W. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microorganisms in recirculating aquaculture systems and their management

(2014) Eugene Rurangwa et al.   Reviews in Aquaculture

C/N ratio-induced structural shift of bacterial communities inside lab-scale aquaculture biofilters

(2013) Luigi Michaud et al.   AQUACULTURAL ENGINEERING

Relevance and Diversity of Nitrospira Populations in Biofilters of Brackish RAS

(2013) Myriam Kruse et al.   PLoS One

Insight into bacterial population in aquaculture systems and its implication

(2012) J.P. Blancheton et al.   AQUACULTURAL ENGINEERING

Ammonia-oxidizing archaea and nitrite-oxidizing nitrospiras in the biofilter of a shrimp recirculating aquaculture system

(2012) Monisha N. Brown et al.   FEMS MICROBIOLOGY ECOLOGY

Draft Genome Sequence of an Ammonia-Oxidizing Archaeon, "Candidatus Nitrosopumilus koreensis" AR1, from Marine Sediment

(2012) S.-J. Park et al.   JOURNAL OF BACTERIOLOGY

Phylogenetic diversity of ammonia-oxidizing archaea and bacteria in biofilters of recirculating aquaculture systems

(2012) Tomoko Sakami et al.   Marine Genomics

Ecophysiology of an Ammonia-Oxidizing Archaeon Adapted to Low-Salinity Habitats

(2012) Annika C. Mosier et al.   MICROBIAL ECOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Aquarium Nitrification Revisited: Thaumarchaeota Are the Dominant Ammonia Oxidizers in Freshwater Aquarium Biofilters

(2011) Laura A. Sauder et al.   PLoS One

Cultivation of Autotrophic Ammonia-Oxidizing Archaea from Marine Sediments in Coculture with Sulfur-Oxidizing Bacteria

(2010) B.-J. Park et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial diversity of biological filters in recirculating aquaculture systems

(2010) Harold J Schreier et al.   CURRENT OPINION IN BIOTECHNOLOGY

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm

(2009) Bärbel U. Foesel et al.   FEMS MICROBIOLOGY ECOLOGY

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Ammonia-oxidizing archaea involved in nitrogen removal

(2009) Jia You et al.   WATER RESEARCH