Comparative Analysis of DNA Methylation Reveals Specific Regulations on Ethylene Pathway in Tomato Fruit

Single-base methylome analysis reveals dynamic epigenomic differences associated with water deficit in apple

(2017) Jidi Xu et al.   PLANT BIOTECHNOLOGY JOURNAL

The Arabidopsis DNA Methylome Is Stable under Transgenerational Drought Stress

(2017) Diep R. Ganguly et al.   PLANT PHYSIOLOGY

DNA methylation patterns and gene expression associated with litter size in Berkshire pig placenta

(2017) Jung Hye Hwang et al.   PLoS One

Differential transcriptome analysis reveals genes related to cold tolerance in seabuckthorn carpenter moth, Eogystia hippophaecolus

(2017) Mingming Cui et al.   PLoS One

Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues

(2017) Philippe Gallusci et al.   TRENDS IN PLANT SCIENCE

Transcriptome analysis reveals the host selection fitness mechanisms of the Rhizoctonia solani AG1IA pathogen

(2017) Yuan Xia et al.   Scientific Reports

Parsing the Regulatory Network between Small RNAs and Target Genes in Ethylene Pathway in Tomato

(2017) Yunxiang Wang et al.   Frontiers in Plant Science

Salt stress responsiveness of a wild cotton species (Gossypium klotzschianum) based on transcriptomic analysis

(2017) Yangyang Wei et al.   PLoS One

Comprehensive profiling of Ethylene Response Factors expression identifies ripening-associated ERF genes and their link to key regulators of fruit ripening in tomato (Solanum lycopersicum).

(2016) Mingchun Liu et al.   PLANT PHYSIOLOGY

On the origin and evolutionary consequences of gene body DNA methylation

(2016) Adam J. Bewick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide DNA methylation profiles changes associated with constant heat stress in pigs as measured by bisulfite sequencing

(2016) Yue Hao et al.   Scientific Reports

DNA Methylation Signatures of the Plant Chromomethyltransferases

(2016) Quentin Gouil et al.   PLoS Genetics

Tomato SlERF.A1, SlERF.B4, SlERF.C3 and SlERF.A3, Members of B3 Group of ERF Family, Are Required for Resistance to Botrytis cinerea

(2016) Zhigang Ouyang et al.   Frontiers in Plant Science

Transcriptome Analysis Provides a Preliminary Regulation Route of the Ethylene Signal Transduction Component, SlEIN2, during Tomato Ripening

(2016) Rui-Heng Wang et al.   PLoS One

Ethylene Response Factor TERF1, Regulated by ETHYLENE-INSENSITIVE3-like Factors, Functions in Reactive Oxygen Species (ROS) Scavenging in Tobacco (Nicotiana tabacum L.)

(2016) Hongbo Zhang et al.   Scientific Reports

siRNA-directed DNA Methylation in Plants

(2015) Meng Xie et al.   CURRENT GENOMICS

DNA methylation pathways and their crosstalk with histone methylation

(2015) Jiamu Du et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Ethylene control of fruit ripening: revisiting the complex network of transcriptional regulation

(2015) Mingchun Liu et al.   PLANT PHYSIOLOGY

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

(2015) Todd Blevins et al.   eLife

MicroRNA mediates DNA methylation of target genes

(2014) Wangxiong Hu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The chimeric repressor version of anEthylene Response Factor(ERF) family member,Sl-ERF.B3, shows contrasting effects on tomato fruit ripening

(2014) Mingchun Liu et al.   NEW PHYTOLOGIST

Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation

(2014) S. R. Eichten et al.   PLANT PHYSIOLOGY

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

Characterization of two tomato AP2/ERF genes, SlCRF1 and SlCRF2 in hormone and stress responses

(2013) Xiuling Shi et al.   PLANT CELL REPORTS

Identification of candidate genes for phenolics accumulation in tomato fruit

(2013) Antonio Di Matteo et al.   PLANT SCIENCE

Programming of DNA Methylation Patterns

(2012) Howard Cedar et al.   Annual Review of Biochemistry

Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene

(2012) Julien Pirrello et al.   BMC PLANT BIOLOGY

Transgenerational maintenance of transgene body CG but not CHG and CHH methylation

(2012) Athanasios Dalakouras et al.   Epigenetics

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Regulation of ripening and opportunities for control in tomato and other fruits

(2012) Graham B. Seymour et al.   PLANT BIOTECHNOLOGY JOURNAL

Roles of DICER-LIKE and ARGONAUTE Proteins in TAS-Derived Small Interfering RNA-Triggered DNA Methylation

(2012) L. Wu et al.   PLANT PHYSIOLOGY

‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes

(2012) Matthew D. Schultz et al.   TRENDS IN GENETICS

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes

(2009) J. Reinders et al.   GENES & DEVELOPMENT

Finding the fifth base: Genome-wide sequencing of cytosine methylation

(2009) R. Lister et al.   GENOME RESEARCH

DNA methylation landscapes: provocative insights from epigenomics

(2008) Miho M. Suzuki et al.   NATURE REVIEWS GENETICS