Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) – A Picture of Genomic Similarities and Differences

Variation of morphological and agronomic traits in hybrids of Trifolium pratense × T. medium and a comparison with the parental species

(2018) H. Jakešová et al.   Czech Journal of Genetics and Plant Breeding

Newly discovered genes for resistance to powdery mildew in the subtelomeric region of the short arm of barley chromosome 7H

(2018) M. Soldánová et al.   Czech Journal of Genetics and Plant Breeding

Modern methods for genetic improvement of Trifolium pratense.

(2018) J. Řepková et al.   Czech Journal of Genetics and Plant Breeding

Gene Classification and Mining of Molecular Markers Useful in Red Clover (Trifolium pratense) Breeding

(2017) Jan Ištvánek et al.   Frontiers in Plant Science

Impact of interspecific hybridization of T. pratense × T. medium and backcrossing on genetic variability of progeny

(2016) J. Dluhošová et al.   Czech Journal of Genetics and Plant Breeding

Relocation of a rust resistance gene R 2 and its marker-assisted gene pyramiding in confection sunflower (Helianthus annuus L.)

(2015) L. L. Qi et al.   THEORETICAL AND APPLIED GENETICS

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

(2015) Jose J. De Vega et al.   Scientific Reports

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Genome assembly and annotation for red clover (Trifolium pratense ; Fabaceae)

(2014) Jan Ištvánek et al.   AMERICAN JOURNAL OF BOTANY

Centromere identity from the DNA point of view

(2014) Miroslav Plohl et al.   CHROMOSOMA

An easy "SteamDrop" method for high quality plant chromosome preparation

(2014) Ilya Kirov et al.   Molecular Cytogenetics

Repetitive Sequences in Plant Nuclear DNA: Types, Distribution, Evolution and Function

(2014) Shweta Mehrotra et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Genetic variation in polyploid forage grass: Assessing the molecular genetic variability in the Paspalum genus

(2013) Fernanda W Cidade et al.   BMC GENETICS

De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba

(2013) Susana L Torales et al.   BMC GENOMICS

Tomato breeding in the genomics era: insights from a SNP array

(2013) Marcela Víquez-Zamora et al.   BMC GENOMICS

Three Potato Centromeres Are Associated with Distinct Haplotypes with or Without Megabase-Sized Satellite Repeat Arrays

(2013) L. Wang et al.   GENETICS

A genetic linkage map based on AFLP and SSR markers and mapping of QTL for dry-matter content in sweetpotato

(2013) Ning Zhao et al.   MOLECULAR BREEDING

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

A whole-genome SNP array (RICE6K) for genomic breeding in rice

(2013) Huihui Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

(2012) Hamid Ashrafi et al.   BMC GENOMICS

Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae

(2012) Mathieu Piednoël et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular characterization of oilseed rape accessions collected from multi continents for exploitation of potential heterotic group through SSR markers

(2012) Muhammad Younas et al.   MOLECULAR BIOLOGY REPORTS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

(2012) Z. Gong et al.   PLANT CELL

Comparative Genetic Mapping and Discovery of Linkage Disequilibrium Across Linkage Groups in White Clover ( Trifolium repens L.)

(2012) Sachiko N. Isobe et al.   G3-Genes Genomes Genetics

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

(2011) Juan E. Zalapa et al.   AMERICAN JOURNAL OF BOTANY

Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

(2011) Maud I. Tenaillon et al.   Genome Biology and Evolution

ECHO: A reference-free short-read error correction algorithm

(2011) W.-C. Kao et al.   GENOME RESEARCH

The Medicago genome provides insight into the evolution of rhizobial symbioses

(2011) Nevin D. Young et al.   NATURE

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

(2011) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

(2010) J. Macas et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

(2010) Saneyoshi Ueno et al.   BMC GENOMICS

Genome Size and Species Diversification

(2010) Ken Kraaijeveld   Evolutionary Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

An overview of plant centromeres

(2009) Guixiang Wang et al.   Journal of Genetics and Genomics

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

Genome Structure of the Legume, Lotus japonicus

(2008) S. Sato et al.   DNA RESEARCH

IDT SciTools: a suite for analysis and design of nucleic acid oligomers

(2008) R. Owczarzy et al.   NUCLEIC ACIDS RESEARCH