Continuously Monocropped Jerusalem Artichoke Changed Soil Bacterial Community Composition and Ammonia-Oxidizing and Denitrifying Bacteria Abundances

Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity

(2017) Sara Coyotzi et al.   ENVIRONMENTAL MICROBIOLOGY

Soil microbial communities in cucumber monoculture and rotation systems and their feedback effects on cucumber seedling growth

(2017) Xingang Zhou et al.   PLANT AND SOIL

Efficient screening of potential cellulases and hemicellulases produced by Bosea sp. FBZP-16 using the combination of enzyme assays and genome analysis

(2017) Aicha Asma Houfani et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Effect of experimental soil disturbance and recovery on structure and function of soil community: a metagenomic and metagenetic approach

(2017) Soobeom Choi et al.   Scientific Reports

Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation

(2017) Shany Ofaim et al.   Frontiers in Microbiology

Members of Gammaproteobacteria as indicator species of healthy banana plants on Fusarium wilt-infested fields in Central America

(2017) Martina Köberl et al.   Scientific Reports

Conversion from long-term cultivated wheat field to Jerusalem artichoke plantation changed soil fungal communities

(2017) Xingang Zhou et al.   Scientific Reports

Edaphic properties override the influence of crops on the composition of the soil bacterial community in a semiarid agroecosystem

(2016) Luke D. Bainard et al.   APPLIED SOIL ECOLOGY

Effects of high organic load on amoA and nirS gene diversity of an intermittently aerated and fed membrane bioreactor treating landfill leachate

(2016) Nikolaos Remmas et al.   BIORESOURCE TECHNOLOGY

16S metagenomics reveals changes in the soil bacterial community driven by soil organic C, N-fertilizer and tillage-crop residue management

(2016) Yosef Chávez-Romero et al.   SOIL & TILLAGE RESEARCH

Crop rotational diversity enhances belowground communities and functions in an agroecosystem

(2015) L. K. Tiemann et al.   ECOLOGY LETTERS

An extended single-index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms

(2015) Hooman Derakhshani et al.   JOURNAL OF BASIC MICROBIOLOGY

Impact of Land Use Management and Soil Properties on Denitrifier Communities of Namibian Savannas

(2015) Gesche Braker et al.   MICROBIAL ECOLOGY

Pyrosequencing technology reveals the impact of different manure doses on the bacterial community in apple rhizosphere soil

(2014) Jian Sun et al.   APPLIED SOIL ECOLOGY

Identification of active denitrifiers in full-scale nutrient removal wastewater treatment systems

(2014) Simon Jon McIlroy et al.   ENVIRONMENTAL MICROBIOLOGY

Intensive agriculture reduces soil biodiversity across Europe

(2014) Maria A. Tsiafouli et al.   GLOBAL CHANGE BIOLOGY

Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

(2014) Miklós Bálint et al.   MOLECULAR ECOLOGY

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

Identifying Factors Controlling the Continuous Corn Yield Penalty

(2013) Laura F. Gentry et al.   AGRONOMY JOURNAL

Arable weeds, cover crops, and tillage drive soil microbial community composition in organic cropping systems

(2013) Sam E. Wortman et al.   APPLIED SOIL ECOLOGY

Plant-Soil Feedbacks and Soil Sickness: From Mechanisms to Application in Agriculture

(2013) Li-Feng Huang et al.   JOURNAL OF CHEMICAL ECOLOGY

Plant-soil feedbacks: the past, the present and future challenges

(2013) Wim H. van der Putten et al.   JOURNAL OF ECOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Liebig’s law of the minimum applied to a greenhouse gas: alleviation of P-limitation reduces soil N2O emission

(2013) B. R. Baral et al.   PLANT AND SOIL

Microbial Population and Community Dynamics on Plant Roots and Their Feedbacks on Plant Communities

(2012) James D. Bever et al.   Annual Review of Microbiology

Dynamics of the diversity of fungal and Fusarium communities during continuous cropping of cucumber in the greenhouse

(2012) Xingang Zhou et al.   FEMS MICROBIOLOGY ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Plant traits and decomposition: are the relationships for roots comparable to those for leaves?

(2011) Marine Birouste et al.   ANNALS OF BOTANY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of intercropping cucumber with onion or garlic on soil enzyme activities, microbial communities and cucumber yield

(2011) Xingang Zhou et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Nocardioides daejeonensis sp. nov., a denitrifying bacterium isolated from sludge in a sewage-disposal plant

(2011) S.-G. Woo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Identification of active bacteria involved in decomposition of complex maize and soybean residues in a tropical Vertisol using 15N-DNA stable isotope probing

(2011) Mingrelia España et al.   PEDOBIOLOGIA

Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses

(2011) Noah Rosenzweig et al.   PLANT DISEASE

Global food demand and the sustainable intensification of agriculture

(2011) D. Tilman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture

(2011) P. N. Bhattacharyya et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Soil beneficial bacteria and their role in plant growth promotion: a review

(2010) Rifat Hayat et al.   ANNALS OF MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Dynamics of ammonia-oxidizing communities in barley-planted bulk soil and rhizosphere following nitrate and ammonium fertilizer amendment

(2010) Katrin Glaser et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Arsenic-resistant bacteria associated with roots of the wild Cirsium arvense (L.) plant from an arsenic polluted soil, and screening of potential plant growth-promoting characteristics

(2010) Lucia Cavalca et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Quantification of Key Genes Steering the Microbial Nitrogen Cycle in the Rhizosphere of Sorghum Cultivars in Tropical Agroecosystems

(2009) B. Hai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking Microbial Community Structure and Function to Seasonal Differences in Soil Moisture and Temperature in a Chihuahuan Desert Grassland

(2009) Colin W. Bell et al.   MICROBIAL ECOLOGY

Home-field advantage accelerates leaf litter decomposition in forests

(2009) Edward Ayres et al.   SOIL BIOLOGY & BIOCHEMISTRY

Endophytic actinomycetes isolated from Aquilaria crassna Pierre ex Lec and screening of plant growth promoters production

(2009) Pongrawee Nimnoi et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Caenimonas koreensis gen. nov., sp. nov., isolated from activated sludge

(2008) S. H. Ryu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Marmoricola bigeumensis sp. nov., a member of the family Nocardioidaceae

(2008) S. G. Dastager et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Links between plant litter chemistry, species diversity, and below-ground ecosystem function

(2008) C. L. Meier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY

Impact of wheat straw decomposition on successional patterns of soil microbial community structure

(2008) Fabiola Bastian et al.   SOIL BIOLOGY & BIOCHEMISTRY