Development of a Custom MALDI-TOF MS Database for Species-Level Identification of Bacterial Isolates Collected From Spacecraft and Associated Surfaces

25 years of serving the community with ribosomal RNA gene reference databases and tools

(2017) Frank Oliver Glöckner et al.   JOURNAL OF BIOTECHNOLOGY

Characterization of bacterial community associated with phytoplankton bloom in a eutrophic lake in South Norway using 16S rRNA gene amplicon sequence analysis

(2017) Niranjan Nitin Parulekar et al.   PLoS One

Bacillus zhangzhouensis sp. nov. and Bacillus australimaris sp. nov.

(2016) Yang Liu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing

(2016) Dieter M. Tourlousse et al.   NUCLEIC ACIDS RESEARCH

Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists

(2016) Praveen Rahi et al.   Frontiers in Microbiology

A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity

(2016) Nam-Phuong Nguyen et al.   npj Biofilms and Microbiomes

Use of MALDI-TOF Mass Spectrometry and a Custom Database to Characterize Bacteria Indigenous to a Unique Cave Environment (Kartchner Caverns, AZ, USA)

(2015) Lin Zhang et al.   Jove-Journal of Visualized Experiments

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

(2014) M. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Identification of Clinical Aeromonas Species byrpoBandgyrBSequencing and Development of a Multiplex PCR Method for Detection of Aeromonas hydrophila, A. caviae, A. veronii, and A. media

(2014) Søren Persson et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Identification of Borrelia Species after Creation of an In-House MALDI-TOF MS Database

(2014) Adriana Calderaro et al.   PLoS One

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

SpectraBank: An open access tool for rapid microbial identification by MALDI-TOF MS fingerprinting

(2012) Karola Böhme et al.   ELECTROPHORESIS

Robustness of two MALDI-TOF mass spectrometry systems for bacterial identification

(2012) Etienne Carbonnelle et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Rapid Screening of Epidemiologically Important Salmonella enterica subsp. enterica Serovars by Whole-Cell Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry

(2011) Ralf Dieckmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of Campylobacter species and related organisms by matrix assisted laser desorption ionization–time of flight (MALDI-TOF) mass spectrometry

(2011) E. Bessède et al.   CLINICAL MICROBIOLOGY AND INFECTION

High-Throughput Identification of Bacteria and Yeast by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry in Conventional Medical Microbiology Laboratories

(2010) S. Q. van Veen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry as an Alternative to 16S rRNA Gene Sequencing for Identification of Difficult-To-Identify Bacterial Strains

(2010) A. Bizzini et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ongoing Revolution in Bacteriology: Routine Identification of Bacteria by Matrix‐Assisted Laser Desorption Ionization Time‐of‐Flight Mass Spectrometry

(2009) Piseth Seng et al.   CLINICAL INFECTIOUS DISEASES

Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes

(2008) J. A. Frank et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluation of Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry in Comparison to 16S rRNA Gene Sequencing for Species Identification of Nonfermenting Bacteria

(2008) A. Mellmann et al.   JOURNAL OF CLINICAL MICROBIOLOGY