Skin Microbiomes of California Terrestrial Salamanders Are Influenced by Habitat More Than Host Phylogeny

Dominance-function relationships in the amphibian skin microbiome

(2017) Jenifer B. Walke et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of host species and environment on the skin microbiome of Plethodontid salamanders

(2017) Carly R. Muletz Wolz et al.   JOURNAL OF ANIMAL ECOLOGY

Intraspecific Variation in the Skin-Associated Microbiome of a Terrestrial Salamander

(2017) Sofia R. Prado-Irwin et al.   MICROBIAL ECOLOGY

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar

(2017) Molly C. Bletz et al.   Frontiers in Microbiology

Skin bacterial microbiome of a generalist Puerto Rican frog varies along elevation and land use gradients

(2017) Myra C. Hughey et al.   PeerJ

Characterization of the Cutaneous Bacterial Communities of Two Giant Salamander Subspecies

(2016) Obed Hernández-Gómez et al.   MICROBIAL ECOLOGY

Most Low-Abundance “Background” Symbiodinium spp. Are Transitory and Have Minimal Functional Significance for Symbiotic Corals

(2016) Moo Joon Lee et al.   MICROBIAL ECOLOGY

Diversity and evolution of the primate skin microbiome

(2016) Sarah E. Council et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Amphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions

(2016) Molly C. Bletz et al.   Nature Communications

Reconstructing historical and contemporary disease dynamics: A case study using the California slender salamander

(2015) C.M. Sette et al.   BIOLOGICAL CONSERVATION

Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens

(2015) Douglas C. Woodhams et al.   ECOLOGY

Microbiome Variation Across Amphibian Skin Regions: Implications for Chytridiomycosis Mitigation Efforts

(2015) Arnaud Bataille et al.   MICROBIAL ECOLOGY

Seasonal and ontogenetic variation of skin microbial communities and relationships to natural disease dynamics in declining amphibians

(2015) Ana V. Longo et al.   Royal Society Open Science

Community Structure and Function of Amphibian Skin Microbes: An Experiment with Bullfrogs Exposed to a Chytrid Fungus

(2015) Jenifer B. Walke et al.   PLoS One

Similarity and differentiation between bacteria associated with skin of salamanders (Plethodon jordani) and free-living assemblages

(2014) Benjamin M. Fitzpatrick et al.   FEMS MICROBIOLOGY ECOLOGY

Amphibian skin may select for rare environmental microbes

(2014) Jenifer B Walke et al.   ISME Journal

Seasonal Variation in Human Gut Microbiome Composition

(2014) Emily R. Davenport et al.   PLoS One

Ex situ Diet Influences the Bacterial Community Associated with the Skin of Red-Eyed Tree Frogs (Agalychnis callidryas)

(2014) Rachael E. Antwis et al.   PLoS One

Interacting Symbionts and Immunity in the Amphibian Skin Mucosome Predict Disease Risk and Probiotic Effectiveness

(2014) Douglas C. Woodhams et al.   PLoS One

Unexpected Rarity of the Pathogen Batrachochytrium dendrobatidis in Appalachian Plethodon Salamanders: 1957–2011

(2014) Carly Muletz et al.   PLoS One

The pathogenBatrachochytrium dendrobatidisdisturbs the frog skin microbiome during a natural epidemic and experimental infection

(2014) Andrea J. Jani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactions between amphibians' symbiotic bacteria cause the production of emergent anti-fungal metabolites

(2014) Andrew H. Loudon et al.   Frontiers in Microbiology

The microbiome: stress, health and disease

(2013) Rachel D. Moloney et al.   MAMMALIAN GENOME

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

Investigating the Impact of Storage Conditions on Microbial Community Composition in Soil Samples

(2013) Benjamin E. R. Rubin et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Surviving Chytridiomycosis: Differential Anti-Batrachochytrium dendrobatidis Activity in Bacterial Isolates from Three Lowland Species of Atelopus

(2012) Sandra V. Flechas et al.   PLoS One

Species-level correlates of susceptibility to the pathogenic amphibian fungus Batrachochytrium dendrobatidis in the United States

(2011) Betsy A. Bancroft et al.   BIODIVERSITY AND CONSERVATION

Low-Abundance Biofilm Species Orchestrates Inflammatory Periodontal Disease through the Commensal Microbiota and Complement

(2011) George Hajishengallis et al.   Cell Host & Microbe

Co-habiting amphibian species harbor unique skin bacterial communities in wild populations

(2011) Valerie J McKenzie et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

(2009) Reid N Harris et al.   ISME Journal

Closing the ring: historical biogeography of the salamander ring speciesEnsatina eschscholtzii

(2009) Shawn R. Kuchta et al.   JOURNAL OF BIOGEOGRAPHY

Pronounced phylogeographic structure on a small spatial scale: Geomorphological evolution and lineage history in the salamander ring species Ensatina eschscholtzii in central coastal California

(2008) Shawn R. Kuchta et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE