Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation

Intra-genomic variation in G + C content and its implications for DNA stable isotope probing

(2014) Nicholas D. Youngblut et al.   Environmental Microbiology Reports

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Dryland soil microbial communities display spatial biogeographic patterns associated with soil depth and soil parent material

(2013) Blaire Steven et al.   FEMS MICROBIOLOGY ECOLOGY

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

(2013) Lara Rajeev et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Temperature Drives the Continental-Scale Distribution of Key Microbes in Topsoil Communities

(2013) F. Garcia-Pichel et al.   SCIENCE

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

(2012) John Christian Gaby et al.   PLoS One

Response of Biological Soil Crust Diazotrophs to Season, Altered Summer Precipitation, and Year-Round Increased Temperature in an Arid Grassland of the Colorado Plateau, USA

(2012) Chris M. Yeager et al.   Frontiers in Microbiology

Nitrogen cycling in desert biological soil crusts across biogeographic regions in the Southwestern United States

(2011) Sarah L. Strauss et al.   BIOGEOCHEMISTRY

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

(2011) William A. Walters et al.   BIOINFORMATICS

Ploidy in cyanobacteria

(2011) Marco Griese et al.   FEMS MICROBIOLOGY LETTERS

Genome of the Cyanobacterium Microcoleus vaginatusFGP-2, a Photosynthetic Ecosystem Engineer of Arid Land Soil Biocrusts Worldwide

(2011) S. R. Starkenburg et al.   JOURNAL OF BACTERIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Effect of biological soil crusts on soil elemental concentrations: implications for biogeochemistry and as traceable biosignatures of ancient life on land

(2009) H. BERALDI-CAMPESI et al.   Geobiology

The Evolution of a Capacity to Build Supra-Cellular Ropes Enabled Filamentous Cyanobacteria to Colonize Highly Erodible Substrates

(2009) Ferran Garcia-Pichel et al.   PLoS One

The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains

(2008) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY