Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes

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Algicidal and growth-inhibiting bacteria associated with seagrass and macroalgae beds in Puget Sound, WA, USA

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Eelgrass Leaf Surface Microbiomes Are Locally Variable and Highly Correlated with Epibiotic Eukaryotes

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Assessing the ecological status of seagrasses using morphology, biochemical descriptors and microbial community analyses. A study in Halophila stipulacea (Forsk.) Aschers meadows in the northern Red Sea

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The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

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Ecosystem services returned through seagrass restoration

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High rates of microbial dinitrogen fixation and sulfate reduction associated with the Mediterranean seagrass Posidonia oceanica

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Novel mycoviruses discovered from metatranscriptomics survey of soybean phyllosphere phytobiomes

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Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific

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Identity of major sulfur-cycle prokaryotes in freshwater lake ecosystems revealed by a comprehensive phylogenetic study of the dissimilatory adenylylsulfate reductase

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Cloning and Characterization of a Novel Agarase from a Newly Isolated Bacterium Simiduia sp. Strain TM-2 Able to Degrade Various Seaweeds

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Factors influencing the growth of seagrass seedlings: A case study of Posidonia australis

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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

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Illumina-based analysis the microbial diversity associated with Thalassia hemprichii in Xincun Bay, South China Sea

(2015) Yu-Feng Jiang et al.   ECOTOXICOLOGY

Sedimenticola thiotaurini sp. nov., a sulfur-oxidizing bacterium isolated from salt marsh sediments, and emended descriptions of the genus Sedimenticola and Sedimenticola selenatireducens

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Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network

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Distribution and Evolution of Nitrogen Fixation Genes in the Phylum Bacteroidetes

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Nitric Oxide: A Multitasked Signaling Gas in Plants

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Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

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Sulfide Intrusion and Detoxification in the Seagrass Zostera marina

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Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species

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The globally widespread genus Sulfurimonas: versatile energy metabolisms and adaptations to redox clines

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Microbial Gene Abundance and Expression Patterns across a River to Ocean Salinity Gradient

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Methylobacterium-plant interaction genes regulated by plant exudate and quorum sensing molecules

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Simiduia curdlanivorans sp. nov., a curdlan-degrading bacterium isolated from the junction between the ocean and a freshwater spring, and emended description of the genus Simiduia

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A novel hydrogen oxidizer amidst the sulfur-oxidizing Thiomicrospira lineage

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Differences in Bacterial Community Structure on Hydrilla verticillata and Vallisneria americana in a Freshwater Spring

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Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

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Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis

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Science and Management of the Introduced Seagrass Zostera japonica in North America

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UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Coastal Ecosystems: A Critical Element of Risk Reduction

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Epiphytic bacterial communities on two common submerged macrophytes in Taihu Lake: diversity and host-specificity

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Overexpression of bacterial ethylene-forming enzyme gene in Trichoderma reesei enhanced the production of ethylene

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

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Effects of epibiotic bacteria on leaf growth and epiphytes of the seagrass Posidonia oceanica

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Structure, function and diversity of the healthy human microbiome

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Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

A Three-Stage Symbiosis Forms the Foundation of Seagrass Ecosystems

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Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

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The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

A native plant growth promoting bacterium, Bacillus sp. B55, rescues growth performance of an ethylene-insensitive plant genotype in nature

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Integrative analysis of environmental sequences using MEGAN4

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Habitat-specific distinctions in estuarine denitrification affect both ecosystem function and services

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Rhizobacterial mediation of plant hormone status

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Soil beneficial bacteria and their role in plant growth promotion: a review

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Denitrification, N-fixation and nitrogen and phosphorus fluxes in different benthic habitats and their contribution to the nitrogen and phosphorus budgets of a shallow oligotrophic sub-tropical coastal system (southern Moreton Bay, Australia)

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Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

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QIIME allows analysis of high-throughput community sequencing data

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Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

(2010) Amrita Pati et al.   Standards in Genomic Sciences

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

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Granulosicoccus coccoides sp. nov., isolated from leaves of seagrass (Zostera marina)

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Distinct pattern of zeatin distribution in the shoot apical meristem marks stress conditions inPosidonia oceanica(L.) Delile plants

(2009) A. Bruno et al.   PLANT BIOSYSTEMS

Analyzing Gene Expression from Marine Microbial Communities using Environmental Transcriptomics

(2009) Rachel S. Poretsky et al.   Jove-Journal of Visualized Experiments

Attached Bacterial Populations Shared by Four Species of Aquatic Angiosperms

(2008) B. C. Crump et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

An Earth-system perspective of the global nitrogen cycle

(2008) Nicolas Gruber et al.   NATURE