Study of the Metatranscriptome of Eight Social and Solitary Wild Bee Species Reveals Novel Viruses and Bee Parasites

A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations

(2017) Emily J. Remnant et al.   JOURNAL OF VIROLOGY

Microsporidia: An Emerging Threat to Bumblebees?

(2017) M.J.F. Brown   TRENDS IN PARASITOLOGY

Characterization of a Novel RNA Virus Discovered in the Autumnal Moth Epirrita autumnata in Sweden

(2017) Joachim de Miranda et al.   Viruses-Basel

Unbiased RNA Shotgun Metagenomics in Social and Solitary Wild Bees Detects Associations with Eukaryote Parasites and New Viruses

(2017) Karel Schoonvaere et al.   PLoS One

Twenty-Five New Viruses Associated with the Drosophilidae (Diptera)

(2016) Claire L. Webster et al.   Evolutionary Bioinformatics

Additional heritable virus in the parasitic wasp Leptopilina boulardi: prevalence, transmission and phenotypic effects

(2016) Julien Martinez et al.   JOURNAL OF GENERAL VIROLOGY

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Honey Bee Viruses in Wild Bees: Viral Prevalence, Loads, and Experimental Inoculation

(2016) Adam G. Dolezal et al.   PLoS One

Metschnikowia: half tetrads, a regicide and the fountain of youth

(2016) Marc-André Lachance   YEAST

The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions

(2016) Philipp Engel et al.   mBio

A century of temporal stability of genetic diversity in wild bumblebees

(2016) Kevin Maebe et al.   Scientific Reports

Multiorganismal Insects: Diversity and Function of Resident Microorganisms

(2015) Angela E. Douglas   Annual Review of Entomology

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

What’s in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual

(2015) Lynsey K. Whitacre et al.   BMC GENOMICS

A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees

(2015) Dino P. McMahon et al.   JOURNAL OF ANIMAL ECOLOGY

Identification, characterization and full-length sequence analysis of a novel dsRNA virus isolated from the arboreal ant Camponotus yamaokai

(2015) Satoshi Koyama et al.   JOURNAL OF GENERAL VIROLOGY

Tubulinosema pampeana sp. n. (Microsporidia, Tubulinosematidae), a pathogen of the South American bumble bee Bombus atratus

(2015) Santiago Plischuk et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Reproductive workers show queenlike gene expression in an intermediately eusocial insect, the buff-tailed bumble beeBombus terrestris

(2015) Mark C. Harrison et al.   MOLECULAR ECOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Who is the puppet master? Replication of a parasitic wasp-associated virus correlates with host behaviour manipulation

(2015) N. M. Dheilly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome Characterization, Prevalence and Distribution of a Macula-Like Virus from Apis mellifera and Varroa destructor

(2015) Joachim de Miranda et al.   Viruses-Basel

The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster

(2015) Claire L. Webster et al.   PLOS BIOLOGY

Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses

(2015) Ci-Xiu Li et al.   eLife

Metatranscriptomic analyses of honey bee colonies

(2015) Cansu Ö. Tozkar et al.   Frontiers in Genetics

Differential gene expression and alternative splicing in insect immune specificity

(2014) Carolyn E Riddell et al.   BMC GENOMICS

Saccharide breakdown and fermentation by the honey bee gut microbiome

(2014) Fredrick J. Lee et al.   ENVIRONMENTAL MICROBIOLOGY

We can't all be supermodels: the value of comparative transcriptomics to the study of non-model insects

(2014) Sara J. Oppenheim et al.   INSECT MOLECULAR BIOLOGY

Tanay virus, a new species of virus isolated from mosquitoes in the Philippines

(2014) T. Nabeshima et al.   JOURNAL OF GENERAL VIROLOGY

Widespread occurrence of honey bee pathogens in solitary bees

(2014) Jorgen Ravoet et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Virome Analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks Reveals Novel Highly Divergent Vertebrate and Invertebrate Viruses

(2014) R. Tokarz et al.   JOURNAL OF VIROLOGY

TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction

(2014) Jia-Ming Chang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Transcriptome Analyses of the Honeybee Response to Nosema ceranae and Insecticides

(2014) Julie Aufauvre et al.   PLoS One

Systemic Spread and Propagation of a Plant-Pathogenic Virus in European Honeybees, Apis mellifera

(2014) J. L. Li et al.   mBio

Densovirus Is a Mutualistic Symbiont of a Global Crop Pest (Helicoverpa armigera) and Protects against a Baculovirus and Bt Biopesticide

(2014) Pengjun Xu et al.   PLoS Pathogens

Odorant-binding proteins and olfactory coding in the solitary bee Osmia cornuta

(2013) Xue-Wei Yin et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Standard methods for virus research inApis mellifera

(2013) Joachim R de Miranda et al.   JOURNAL OF APICULTURAL RESEARCH

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome analysis of the salivary glands of potato leafhopper, Empoasca fabae

(2012) Bridget DeLay et al.   JOURNAL OF INSECT PHYSIOLOGY

Host range expansion of honey bee Black Queen Cell Virus in the bumble bee, Bombus huntii

(2011) Wenjun Peng et al.   APIDOLOGIE

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia

(2011) Charles Runckel et al.   PLoS One

Genes involved in convergent evolution of eusociality in bees

(2011) S. H. Woodard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bees brought to their knees: microbes affecting honey bee health

(2011) Jay D. Evans et al.   TRENDS IN MICROBIOLOGY

Molecular Divergence Defines Two Distinct Lineages of Crithidia bombi (Trypanosomatidae), Parasites of Bumblebees

(2010) REGULA SCHMID-HEMPEL et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Isolation and full-length sequence analysis of Armigeres subalbatus totivirus, the first totivirus isolate from mosquitoes representing a proposed novel genus (Artivirus) of the family Totiviridae

(2010) Y. Zhai et al.   JOURNAL OF GENERAL VIROLOGY

Susceptibility of North-American and European crickets to Acheta domesticus densovirus (AdDNV) and associated epizootics

(2010) J. Szelei et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

RNA Viruses in Hymenopteran Pollinators: Evidence of Inter-Taxa Virus Transmission via Pollen and Potential Impact on Non-Apis Hymenopteran Species

(2010) Rajwinder Singh et al.   PLoS One

Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs

(2010) Q. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS