Parameter uncertainty quantification using surrogate models applied to a spatial model of yeast mating polarization

Planar cell polarity in development and disease

(2017) Mitchell T. Butler et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Sparse Approximation using $\ell_1-\ell_2$ Minimization and Its Application to Stochastic Collocation

(2017) Liang Yan et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING

Orthogonal parallel MCMC methods for sampling and optimization

(2016) L. Martino et al.   DIGITAL SIGNAL PROCESSING

Biophysically Motivated Regulatory Network Inference: Progress and Prospects

(2016) Tarmo Äijö et al.   HUMAN HEREDITY

Nonadaptive Quasi-Optimal Points Selection for Least Squares Linear Regression

(2016) Yeonjong Shin et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING

The Creation of Surrogate Models for Fast Estimation of Complex Model Outcomes

(2016) W. Andrew Pruett et al.   PLoS One

Connecting Local and Global Sensitivities in a Mathematical Model for Wound Healing

(2015) Nitin A. Krishna et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Spontaneous Cdc42 Polarization Independent of GDI-Mediated Extraction and Actin-Based Trafficking

(2015) Felipe O. Bendezú et al.   PLOS BIOLOGY

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

(2014) Juliane Liepe et al.   Nature Protocols

Bayesian Parameter Inference and Model Selection by Population Annealing in Systems Biology

(2014) Yohei Murakami   PLoS One

Utilization of extracellular information before ligand-receptor binding reaches equilibrium expands and shifts the input dynamic range

(2014) Alejandra C. Ventura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topological sensitivity analysis for systems biology

(2014) Ann C. Babtie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial Stochastic Dynamics Enable Robust Cell Polarization

(2013) Michael J. Lawson et al.   PLoS Computational Biology

Noise filtering tradeoffs in spatial gradient sensing and cell polarization response

(2011) Ching-Shan Chou et al.   BMC Systems Biology

Bayesian parameter estimation for nonlinear modelling of biological pathways

(2011) Omid Ghasemi et al.   BMC Systems Biology

Sensitivity analysis approaches applied to systems biology models

(2011) Z. Zi   IET Systems Biology

A non-adapted sparse approximation of PDEs with stochastic inputs

(2011) Alireza Doostan et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo

(2011) A. Golightly et al.   Interface Focus

Parameter Estimation and Model Selection in Computational Biology

(2010) Gabriele Lillacci et al.   PLoS Computational Biology

A Stochastic Collocation Approach to Bayesian Inference in Inverse Problems

(2009) Youssef Marzouk et al.   Communications in Computational Physics

Systems biology: parameter estimation for biochemical models

(2009) Maksat Ashyraliyev et al.   FEBS Journal

Parameter estimation and sensitivity analysis in an agent-based model of Leishmania major infection

(2009) Garrett M. Dancik et al.   JOURNAL OF THEORETICAL BIOLOGY

Derivative based global sensitivity measures and their link with global sensitivity indices

(2009) I.M. Sobol’ et al.   MATHEMATICS AND COMPUTERS IN SIMULATION

Uncertainty Quantification and Polynomial Chaos Techniques in Computational Fluid Dynamics

(2008) Habib N. Najm   Annual Review of Fluid Mechanics

Cell polarity and cancer - cell and tissue polarity as a non-canonical tumor suppressor

(2008) M. Lee et al.   JOURNAL OF CELL SCIENCE

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

(2008) T. Toni et al.   Journal of the Royal Society Interface

A methodology for performing global uncertainty and sensitivity analysis in systems biology

(2008) Simeone Marino et al.   JOURNAL OF THEORETICAL BIOLOGY

Modeling Robustness Tradeoffs in Yeast Cell Polarization Induced by Spatial Gradients

(2008) Ching-Shan Chou et al.   PLoS One

Global sensitivity analysis using polynomial chaos expansions

(2007) Bruno Sudret   RELIABILITY ENGINEERING & SYSTEM SAFETY