Biobeam—Multiplexed wave-optical simulations of light-sheet microscopy

A guide to light-sheet fluorescence microscopy for multiscale imaging

(2017) Rory M Power et al.   NATURE METHODS

Reconfigurable and responsive droplet-based compound micro-lenses

(2017) Sara Nagelberg et al.   Nature Communications

Correlative three-dimensional fluorescence and refractive index tomography: bridging the gap between molecular specificity and quantitative bioimaging

(2017) Kyoohyun Kim et al.   Biomedical Optics Express

Site-Specific Cryo-focused Ion Beam Sample Preparation Guided by 3D Correlative Microscopy

(2016) Jan Arnold et al.   BIOPHYSICAL JOURNAL

A convergent Born series for solving the inhomogeneous Helmholtz equation in arbitrarily large media

(2016) Gerwin Osnabrugge et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Imagining the future of bioimage analysis

(2016) Erik Meijering et al.   NATURE BIOTECHNOLOGY

SuReSim: simulating localization microscopy experiments from ground truth models

(2016) Varun Venkataramani et al.   NATURE METHODS

A platform for brain-wide imaging and reconstruction of individual neurons

(2016) Michael N Economo et al.   eLife

Fractal propagation method enables realistic optical microscopy simulations in biological tissues

(2016) Adam K. Glaser et al.   Optica

Light-sheet fluorescence microscopy for quantitative biology

(2015) Ernst H K Stelzer   NATURE METHODS

Inverted light-sheet microscope for imaging mouse pre-implantation development

(2015) Petr Strnad et al.   NATURE METHODS

Translation correlations in anisotropically scattering media

(2015) Benjamin Judkewitz et al.   Nature Physics

Rapid adaptive optical recovery of optimal resolution over large volumes

(2014) Kai Wang et al.   NATURE METHODS

Efficient Bayesian-based multiview deconvolution

(2014) Stephan Preibisch et al.   NATURE METHODS

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

(2014) Robert Prevedel et al.   NATURE METHODS

Direct observation of light focusing by single photoreceptor cell nuclei

(2014) Zuzanna Błaszczak et al.   OPTICS EXPRESS

Coherence-controlled holographic microscopy in diffuse media

(2014) Martin Lošt’ák et al.   OPTICS EXPRESS

Review of Monte Carlo modeling of light transport in tissues

(2013) Caigang Zhu et al.   JOURNAL OF BIOMEDICAL OPTICS

Optical properties of biological tissues: a review

(2013) Steven L Jacques   PHYSICS IN MEDICINE AND BIOLOGY

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

(2012) Raju Tomer et al.   NATURE METHODS

Restoration of Uneven Illumination in Light Sheet Microscopy Images

(2011) Mohammad Shorif Uddin et al.   MICROSCOPY AND MICROANALYSIS

PyCUDA and PyOpenCL: A scripting-based approach to GPU run-time code generation

(2011) Andreas Klöckner et al.   PARALLEL COMPUTING

Microscopy with self-reconstructing beams

(2010) Florian O. Fahrbach et al.   Nature Photonics

Physical insight into light scattering by photoreceptor cell nuclei

(2010) Moritz Kreysing et al.   OPTICS LETTERS

Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution

(2009) Irina Solovei et al.   CELL

Meep: A flexible free-software package for electromagnetic simulations by the FDTD method

(2009) Ardavan F. Oskooi et al.   COMPUTER PHYSICS COMMUNICATIONS

Selective plane illumination microscopy techniques in developmental biology

(2009) J. Huisken et al.   DEVELOPMENT