Loss of RXFP2 and INSL3 genes in Afrotheria shows that testicular descent is the ancestral condition in placental mammals

A genomics approach reveals insights into the importance of gene losses for mammalian adaptations

(2018) Virag Sharma et al.   Nature Communications

Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation

(2017) Virag Sharma et al.   NUCLEIC ACIDS RESEARCH

Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species’ Phenotypic and Genomic Differences

(2016) Xavier Prudent et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inactivation of C4orf26 in toothless placental mammals

(2016) Mark S. Springer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation

(2016) Virag Sharma et al.   NUCLEIC ACIDS RESEARCH

Mammal madness: is the mammal tree of life not yet resolved?

(2016) Nicole M. Foley et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Long-read sequence assembly of the gorilla genome

(2016) D. Gordon et al.   SCIENCE

Regulation of testicular descent

(2015) John M. Hutson et al.   PEDIATRIC SURGERY INTERNATIONAL

RELAX: Detecting Relaxed Selection in a Phylogenetic Framework

(2014) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Eyes underground: Regression of visual protein networks in subterranean mammals

(2014) Christopher A. Emerling et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax

(2014) Xiaodong Fang et al.   Nature Communications

Heterogeneous Models Place the Root of the Placental Mammal Phylogeny

(2013) Claire C. Morgan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals

(2013) Jonathan Romiguier et al.   MOLECULAR BIOLOGY AND EVOLUTION

Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish

(2013) Michael Hiller et al.   NUCLEIC ACIDS RESEARCH

Recurrent gene loss correlates with the evolution of stomach phenotypes in gnathostome history

(2013) L. F. C. Castro et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

(2013) M. A. O'Leary et al.   SCIENCE

Insulin-Like 3 Signaling Is Important for Testicular Descent but Dispensable for Spermatogenesis and Germ Cell Survival in Adult Mice1

(2012) Zaohua Huang et al.   BIOLOGY OF REPRODUCTION

Expression of anti-Müllerian hormone, CDKN1B, connexin 43, androgen receptor and steroidogenic enzymes in the equine cryptorchid testis

(2012) J. Almeida et al.   EQUINE VETERINARY JOURNAL

The evolution of mammalian body temperature: the Cenozoic supraendothermic pulses

(2012) Barry G. Lovegrove   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

(2012) D. G. MacArthur et al.   SCIENCE

A “Forward Genomics” Approach Links Genotype to Phenotype using Independent Phenotypic Losses among Related Species

(2012) Michael Hiller et al.   Cell Reports

The Structural Determinants of Insulin-Like Peptide 3 Activity

(2012) Ross A. D. Bathgate et al.   Frontiers in Endocrinology

Genome sequencing reveals insights into physiology and longevity of the naked mole rat

(2011) Eun Bae Kim et al.   NATURE

The sequence read archive: explosive growth of sequencing data

(2011) Y. Kodama et al.   NUCLEIC ACIDS RESEARCH

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

(2011) R. W. Meredith et al.   SCIENCE

Nomenclature and placental mammal phylogeny

(2010) Robert J Asher et al.   BMC EVOLUTIONARY BIOLOGY

The evolutionary history of testicular externalization and the origin of the scrotum

(2010) Karel Kleisner et al.   JOURNAL OF BIOSCIENCES

Mammalian Evolution May not Be Strictly Bifurcating

(2010) B. M. Hallstrom et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Monograph of Orycteropus afer.-I. Anatomy except the Nervous System, Skin, and Skeleton.

(2010) Charles F. Sonntag   PROCEEDINGS OF THE ZOOLOGICAL SOCIETY OF LONDON

Recapitulating the evolution of Afrotheria: 57 genes and rare genomic changes (RGCs) consolidate their history

(2010) N. Poulakakis et al.   SYSTEMATICS AND BIODIVERSITY

Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates

(2010) Zhengdong D Zhang et al.   GENOME BIOLOGY

The new framework for understanding placental mammal evolution

(2009) Robert J. Asher et al.   BIOESSAYS

Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals

(2009) H. Nishihara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Decay of the Tooth Gene Enamelin (ENAM) Mirrors the Loss of Enamel in the Fossil Record of Placental Mammals

(2009) Robert W. Meredith et al.   PLoS Genetics

Role of Hormones, Genes, and Environment in Human Cryptorchidism

(2008) Carlo Foresta et al.   ENDOCRINE REVIEWS

Factors controlling testis descent

(2008) Ieuan A Hughes et al.   EUROPEAN JOURNAL OF ENDOCRINOLOGY

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE