Predicting Interactions between Virus and Host Proteins Using Repeat Patterns and Composition of Amino Acids

An improved method for predicting interactions between virus and human proteins

(2017) Byungmin Kim et al.   Journal of Bioinformatics and Computational Biology

A NMF based approach for integrating multiple data sources to predict HIV-1–human PPIs

(2016) Sumanta Ray et al.   BMC BIOINFORMATICS

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

DeNovo: virus-host sequence-based protein–protein interaction prediction

(2015) Fatma-Elzahraa Eid et al.   BIOINFORMATICS

Ebolavirus Evolution: Past and Present

(2015) Marc-Antoine de La Vega et al.   PLoS Pathogens

Computational approaches for prediction of pathogen-host protein-protein interactions

(2015) Esmaeil Nourani et al.   Frontiers in Microbiology

Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions

(2014) Hufeng Zhou et al.   Biology Direct

The 2014 Ebola virus disease outbreak in West Africa

(2014) D. Gatherer   JOURNAL OF GENERAL VIROLOGY

VirusMentha: a new resource for virus-host protein interactions

(2014) Alberto Calderone et al.   NUCLEIC ACIDS RESEARCH

Prediction of Interactions between Viral and Host Proteins Using Supervised Machine Learning Methods

(2014) Ranjan Kumar Barman et al.   PLoS One

Understanding and identifying amino acid repeats

(2013) H. Luo et al.   BRIEFINGS IN BIOINFORMATICS

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

Prediction of protein-protein interactions between viruses and human by an SVM model

(2012) Guangyu Cui et al.   BMC BIOINFORMATICS

Flaws in evaluation schemes for pair-input computational predictions

(2012) Yungki Park et al.   NATURE METHODS

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

HCVpro: Hepatitis C virus protein interaction database

(2011) Samuel K. Kwofie et al.   INFECTION GENETICS AND EVOLUTION

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Low-complexity regions within protein sequences have position-dependent roles

(2010) Alain Coletta et al.   BMC Systems Biology

VirusMINT: a viral protein interaction database

(2008) A. Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH