Models for predicting the evolution of influenza to inform vaccine strain selection

Negative impact of prior influenza vaccination on current influenza vaccination among people infected and not infected in prior season: A test-negative case-control study in Japan

(2017) Nobuo Saito et al.   VACCINE

Machine Learning for Predicting Vaccine Immunogenicity

(2016) Eva K. Lee et al.   INTERFACES

Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses

(2016) Richard A. Neher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

nextflu: real-time tracking of seasonal influenza virus evolution in humans

(2015) Richard A. Neher et al.   BIOINFORMATICS

H3N2 Mismatch of 2014–15 Northern Hemisphere Influenza Vaccines and Head-to-head Comparison between Human and Ferret Antisera derived Antigenic Maps

(2015) Hang Xie et al.   Scientific Reports

Influenza: Can we cope better with the unpredictable?

(2015) Gaël Dos Santos et al.   Human Vaccines & Immunotherapeutics

Impact of Repeated Vaccination on Vaccine Effectiveness Against Influenza A(H3N2) and B During 8 Seasons

(2014) Huong Q. McLean et al.   CLINICAL INFECTIOUS DISEASES

Influenza Vaccine Effectiveness in Households With Children During the 2012-2013 Season: Assessments of Prior Vaccination and Serologic Susceptibility

(2014) S. E. Ohmit et al.   JOURNAL OF INFECTIOUS DISEASES

Computational Prediction of Vaccine Strains for Human Influenza A (H3N2) Viruses

(2014) L. Steinbruck et al.   JOURNAL OF VIROLOGY

Prediction is worth a shot

(2014) Katia Koelle et al.   NATURE

A predictive fitness model for influenza

(2014) Marta Łuksza et al.   NATURE

Predicting evolution from the shape of genealogical trees

(2014) Richard A Neher et al.   eLife

Immune history shapes specificity of pandemic H1N1 influenza antibody responses

(2013) Yang Li et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Using Sequence Data To Infer the Antigenicity of Influenza Virus

(2013) H. Sun et al.   mBio

Inference of Genotype–Phenotype Relationships in the Antigenic Evolution of Human Influenza A (H3N2) Viruses

(2012) Lars Steinbrück et al.   PLoS Computational Biology

The ferret as a model organism to study influenza A virus infection

(2011) J. A. Belser et al.   Disease Models & Mechanisms

Differentiation of Influenza B Virus Lineages Yamagata and Victoria by Real-Time PCR

(2010) B. Biere et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Allele dynamics plots for the study of evolutionary dynamics in viral populations

(2010) Lars Steinbrück et al.   NUCLEIC ACIDS RESEARCH

Low-dimensional clustering detects incipient dominant influenza strain clusters

(2010) Jiankui He et al.   PROTEIN ENGINEERING DESIGN & SELECTION

A Computational Framework for Influenza Antigenic Cartography

(2010) Zhipeng Cai et al.   PLoS Computational Biology

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bioinformatics models for predicting antigenic variants of influenza A/H3N2 virus

(2008) Yu-Chieh Liao et al.   BIOINFORMATICS

Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses

(2008) Colin A. Russell et al.   VACCINE