Allele dynamics plots for the study of evolutionary dynamics in viral populations

Use of Antigenic Cartography in Vaccine Seed Strain Selection

(2010) Ron A. M. Fouchier et al.   AVIAN DISEASES

Genomic Signature and Mutation Trend Analysis of Pandemic (H1N1) 2009 Influenza A Virus

(2010) Chungen Pan et al.   PLoS One

Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus

(2009) Zhen Xia et al.   BIOINFORMATICS

Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses

(2009) Jhang-Wei Huang et al.   BMC BIOINFORMATICS

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

Emergence and pandemic potential of swine-origin H1N1 influenza virus

(2009) Gabriele Neumann et al.   NATURE

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Historical Perspective — Emergence of Influenza A (H1N1) Viruses

(2009) Shanta M. Zimmer et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Persistent Legacy of the 1918 Influenza Virus

(2009) David M. Morens et al.   NEW ENGLAND JOURNAL OF MEDICINE

Reliabilities of identifying positive selection by the branch-site and the site-prediction methods

(2009) M. Nozawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans

(2009) R. J. Garten et al.   SCIENCE

Bioinformatics models for predicting antigenic variants of influenza A/H3N2 virus

(2008) Yu-Chieh Liao et al.   BIOINFORMATICS

A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and Its Application to Influenza A Virus

(2008) S. L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE

The Global Circulation of Seasonal Influenza A (H3N2) Viruses

(2008) C. A. Russell et al.   SCIENCE

Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses

(2008) Colin A. Russell et al.   VACCINE

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics