Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan

EXD2 governs germ stem cell homeostasis and lifespan by promoting mitoribosome integrity and translation

(2018) Joana Silva et al.   NATURE CELL BIOLOGY

Single-cell mass spectrometry with multi-solvent extraction identifies metabolic differences between left and right blastomeres in the 8-cell frog (Xenopus) embryo

(2016) Rosemary M. Onjiko et al.   ANALYST

Optimization and comparison of bottom-up proteomic sample preparation for early-stage Xenopus laevis embryos

(2016) Elizabeth H. Peuchen et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Single Cell Proteomics Using Frog (Xenopus laevis) Blastomeres Isolated from Early Stage Embryos, Which Form a Geometric Progression in Protein Content

(2016) Liangliang Sun et al.   ANALYTICAL CHEMISTRY

Single-Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16-Cell Frog (Xenopus ) Embryo

(2016) Camille Lombard-Banek et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Genome evolution in the allotetraploid frog Xenopus laevis

(2016) Adam M. Session et al.   NATURE

On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development

(2015) Leonid Peshkin et al.   DEVELOPMENTAL CELL

Global analysis of asymmetric RNA enrichment in oocytes reveals low conservation between closely related Xenopus species

(2015) Maike Claußen et al.   MOLECULAR BIOLOGY OF THE CELL

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo

(2015) Rosemary M. Onjiko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intracellular microRNA profiles form in the Xenopus laevis oocyte that may contribute to asymmetric cell division

(2015) Monika Sidova et al.   Scientific Reports

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Coco regulates dorsoventral specification of germ layers via inhibition of TGF  signalling

(2013) T. J. D. Bates et al.   DEVELOPMENT

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Single blastomere expression profiling of Xenopus laevis embryos of 8 to 32-cells reveals developmental asymmetry

(2013) Monika Flachsova et al.   Scientific Reports

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Foxi2 Is an Animally Localized Maternal mRNA in Xenopus, and an Activator of the Zygotic Ectoderm Activator Foxi1e

(2012) Sang-Wook Cha et al.   PLoS One

mRNA Localization and Translational Control in Drosophila Oogenesis

(2012) P. Lasko   Cold Spring Harbor Perspectives in Biology

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

The Nodal Inhibitor Coco Is a Critical Target of Leftward Flow in Xenopus

(2010) Axel Schweickert et al.   CURRENT BIOLOGY

Identification of germ plasm-associated transcripts by microarray analysis of Xenopus vegetal cortex RNA

(2010) Tawny N. Cuykendall et al.   DEVELOPMENTAL DYNAMICS

Spatial expression profiles in the Xenopus laevis oocytes measured with qPCR tomography

(2010) Radek Sindelka et al.   METHODS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence

(2008) Dirk A. Kleinjan et al.   PLoS Genetics

Functional diversification of duplicate genes through subcellular adaptation of encoded proteins

(2008) Ana C Marques et al.   GENOME BIOLOGY