Network Motifs Capable of Decoding Transcription Factor Dynamics

Dynamic control of gene regulatory logic by seemingly redundant transcription factors

(2016) Zohreh AkhavanAghdam et al.   eLife

Noise Facilitates Transcriptional Control under Dynamic Inputs

(2015) Ryan A. Kellogg et al.   CELL

cis Determinants of Promoter Threshold and Activation Timescale

(2015) Anders S. Hansen et al.   Cell Reports

Accurate Encoding and Decoding by Single Cells: Amplitude Versus Frequency Modulation

(2015) Gabriele Micali et al.   PLoS Computational Biology

Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features

(2015) Hirenkumar K. Makadia et al.   PLoS Computational Biology

Pulsatile Dynamics in the Yeast Proteome

(2014) Chiraj K. Dalal et al.   CURRENT BIOLOGY

Ultradian oscillations and pulses: coordinating cellular responses and cell fate decisions

(2014) A. Isomura et al.   DEVELOPMENT

Accurate information transmission through dynamic biochemical signaling networks

(2014) J. Selimkhanov et al.   SCIENCE

Encoding and Decoding Cellular Information through Signaling Dynamics

(2013) Jeremy E. Purvis et al.   CELL

Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression

(2013) A. S. Hansen et al.   Molecular Systems Biology

Functional Roles of Pulsing in Genetic Circuits

(2013) J. H. Levine et al.   SCIENCE

Tunable Signal Processing Through Modular Control of Transcription Factor Translocation

(2013) N. Hao et al.   SCIENCE

Oscillatory Control of Factors Determining Multipotency and Fate in Mouse Neural Progenitors

(2013) I. Imayoshi et al.   SCIENCE

Frequency-Modulated Pulses of ERK Activity Transmit Quantitative Proliferation Signals

(2012) John G. Albeck et al.   MOLECULAR CELL

Reliability of Frequency and Amplitude Decoding in Gene Regulation

(2012) Filipe Tostevin et al.   PHYSICAL REVIEW LETTERS

Dynamics of TGF-  signaling reveal adaptive and pulsatile behaviors reflected in the nuclear localization of transcription factor Smad4

(2012) A. Warmflash et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

p53 Dynamics Control Cell Fate

(2012) J. E. Purvis et al.   SCIENCE

Impulse Control: Temporal Dynamics in Gene Transcription

(2011) Nir Yosef et al.   CELL

Signal-dependent dynamics of transcription factor translocation controls gene expression

(2011) Nan Hao et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Signalling ballet in space and time

(2010) Boris N. Kholodenko et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Pulsatile Stimulation Determines Timing and Specificity of NF- B-Dependent Transcription

(2009) L. Ashall et al.   SCIENCE

The dark side of a tumor suppressor: anti-apoptotic p53

(2008) R U Jänicke et al.   CELL DEATH AND DIFFERENTIATION

Frequency-modulated nuclear localization bursts coordinate gene regulation

(2008) Long Cai et al.   NATURE