Biogeographical Differences in the Influence of Maternal Microbial Sources on the Early Successional Development of the Bovine Neonatal Gastrointestinal tract

Feed efficiency phenotypes in lambs involve changes in ruminal, colonic, and small-intestine-located microbiota1

(2017) K. Perea et al.   JOURNAL OF ANIMAL SCIENCE

Genetic and functional analysis of the bovine uterine microbiota. Part I: Metritis versus healthy cows

(2017) M.L.S. Bicalho et al.   JOURNAL OF DAIRY SCIENCE

The bovine colostrum microbiome and its association with clinical mastitis

(2017) Svetlana F. Lima et al.   JOURNAL OF DAIRY SCIENCE

Genetic and functional analysis of the bovine uterine microbiota. Part II: Purulent vaginal discharge versus healthy cows

(2017) M.L.S. Bicalho et al.   JOURNAL OF DAIRY SCIENCE

Characterization and identification of microbial communities in bovine necrotic vulvovaginitis

(2017) N.Y. Shpigel et al.   VETERINARY JOURNAL

Rumen methanogens and mitigation of methane emission by anti-methanogenic compounds and substances

(2017) Amlan Patra et al.   Journal of Animal Science and Biotechnology

Vaginal microbial communities from synchronized heifers and cows with reproductive disorders

(2016) C. Gonzalez Moreno et al.   JOURNAL OF APPLIED MICROBIOLOGY

Oxygen metabolism and barrier regulation in the intestinal mucosa

(2016) Louise E. Glover et al.   JOURNAL OF CLINICAL INVESTIGATION

The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos

(2016) Felix Sommer et al.   Cell Reports

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Qualitative analysis of the vaginal microbiota of healthy cattle and cattle with genital-tract disease

(2015) N.F. Rodrigues et al.   GENETICS AND MOLECULAR RESEARCH

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

Vaginal Microbiome Characterization of Nellore Cattle Using Metagenomic Analysis

(2015) Mateus Laguardia-Nascimento et al.   PLoS One

Characterization of bacterial populations from Murciano-Granadina goat colostrum

(2014) Patricia Ruiz et al.   Dairy Science & Technology

Hibernation alters the diversity and composition of mucosa-associated bacteria while enhancing antimicrobial defence in the gut of 13-lined ground squirrels

(2014) Kimberly A. Dill-McFarland et al.   MOLECULAR ECOLOGY

Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

(2014) Renee M. Petri et al.   PLoS One

Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling

(2014) Hailan Piao et al.   Frontiers in Microbiology

Vertical mother-neonate transfer of maternal gut bacteria via breastfeeding

(2013) Ted Jost et al.   ENVIRONMENTAL MICROBIOLOGY

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Effect of calf starter feeding on gut microbial diversity and expression of genes involved in host immune responses and tight junctions in dairy calves during weaning transition

(2013) Nilusha Malmuthuge et al.   JOURNAL OF DAIRY SCIENCE

Gastrointestinal Tract Microbiota and Probiotics in Production Animals

(2013) Carl J. Yeoman et al.   Annual Review of Animal Biosciences

The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery

(2012) Raul Cabrera-Rubio et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Effects of feeding a calf starter on molecular adaptations in the ruminal epithelium and liver of Holstein dairy calves

(2012) A.H. Laarman et al.   JOURNAL OF DAIRY SCIENCE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

(2012) Chengwei Luo et al.   PLoS One

Diversity and Succession of Bacterial Communities in the Uterine Fluid of Postpartum Metritic, Endometritic and Healthy Dairy Cows

(2012) Thiago M. A. Santos et al.   PLoS One

Investigation of postpartum dairy cows’ uterine microbial diversity using metagenomic pyrosequencing of the 16S rRNA gene

(2012) V.S. Machado et al.   VETERINARY MICROBIOLOGY

Commensal microbiome effects on mucosal immune system development in the ruminant gastrointestinal tract

(2012) Ryan Taschuk et al.   ANIMAL HEALTH RESEARCH REVIEWS

Cow Teat Skin, a Potential Source of Diverse Microbial Populations for Cheese Production

(2011) Isabelle Verdier-Metz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Towards an Evolutionary Model of Animal-Associated Microbiomes

(2011) Carl J. Yeoman et al.   Entropy

Mode of Birth Delivery Affects Oral Microbiota in Infants

(2011) P. Lif Holgerson et al.   JOURNAL OF DENTAL RESEARCH

Characterization of the Diversity and Temporal Stability of Bacterial Communities in Human Milk

(2011) Katherine M. Hunt et al.   PLoS One

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

The persistence of bacterial and methanogenic archaeal communities residing in the rumen of young lambs

(2010) David R. Yáñez-Ruiz et al.   FEMS MICROBIOLOGY ECOLOGY

Host specificity of the ruminal bacterial community in the dairy cow following near-total exchange of ruminal contents1

(2010) P.J. Weimer et al.   JOURNAL OF DAIRY SCIENCE

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Risk factors for clinical endometritis in postpartum dairy cattle

(2010) Timothy J. Potter et al.   THERIOGENOLOGY

Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

(2009) E. Khafipour et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative studies of microbial populations in the rumen, duodenum, ileum and faeces of lactating dairy cows

(2009) J.C. Frey et al.   JOURNAL OF APPLIED MICROBIOLOGY

Variations in bovine milk oligosaccharides during early and middle lactation stages analyzed by high-performance liquid chromatography-chip/mass spectrometry

(2009) N. Tao et al.   JOURNAL OF DAIRY SCIENCE

Assessment of the bacterial diversity of breast milk of healthy women by quantitative real-time PCR

(2009) M.C. Collado et al.   LETTERS IN APPLIED MICROBIOLOGY

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Immune components of bovine colostrum and milk1

(2008) K. Stelwagen et al.   JOURNAL OF ANIMAL SCIENCE