Diet and microbiota linked in health and disease

Glycan Utilization and Cross-Feeding Activities by Bifidobacteria

(2018) Francesca Turroni et al.   TRENDS IN MICROBIOLOGY

Meta-analysis of the human gut microbiome from urbanized and pre-agricultural populations

(2017) Leonardo Mancabelli et al.   ENVIRONMENTAL MICROBIOLOGY

Post-dieting weight gain: the role of persistent microbiome changes

(2017) Christoph A Thaiss et al.   Future Microbiology

Obesity and microbiota: an example of an intricate relationship

(2017) Sabrina Duranti et al.   Genes and Nutrition

The low FODMAP diet: recent advances in understanding its mechanisms and efficacy in IBS

(2017) Heidi M Staudacher et al.   GUT

Effect of Lactobacillus on body weight and body fat in overweight subjects: a systematic review of randomized controlled clinical trials

(2017) L Crovesy et al.   INTERNATIONAL JOURNAL OF OBESITY

Phytochemicals for human disease: An update on plant-derived compounds antibacterial activity

(2017) Ramona Barbieri et al.   MICROBIOLOGICAL RESEARCH

Vitamin D signaling in intestinal innate immunity and homeostasis

(2017) Vassil Dimitrov et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Bile acids and colon cancer: Is FXR the solution of the conundrum?

(2017) Raffaella Maria Gadaleta et al.   MOLECULAR ASPECTS OF MEDICINE

The resilience of the intestinal microbiota influences health and disease

(2017) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

Lactobacillus reuteriinduces gut intraepithelial CD4+CD8αα+T cells

(2017) Luisa Cervantes-Barragan et al.   SCIENCE

The effects of micronutrient deficiencies on bacterial species from the human gut microbiota

(2017) Matthew C. Hibberd et al.   Science Translational Medicine

Shaping functional gut microbiota using dietary bioactives to reduce colon cancer risk

(2017) Derek V. Seidel et al.   SEMINARS IN CANCER BIOLOGY

Micronutrient Deficiencies and the Human Gut Microbiota

(2017) Núria Mach et al.   TRENDS IN MICROBIOLOGY

Bifidobacterium adolescentis INIA P784: The first probiotic bacterium capable of producing enterodiol from lignan extracts

(2017) Pilar Gaya et al.   Journal of Functional Foods

Are the Gut Bacteria Telling Us to Eat or Not to Eat? Reviewing the Role of Gut Microbiota in the Etiology, Disease Progression and Treatment of Eating Disorders

(2017) Yan Lam et al.   Nutrients

An Examination of Diet for the Maintenance of Remission in Inflammatory Bowel Disease

(2017) Natasha Haskey et al.   Nutrients

Intake of different types of red meat, poultry, and fish and incident colorectal cancer in women and men: results from the Malmö Diet and Cancer Study

(2017) Alexandra Vulcan et al.   Food & Nutrition Research

Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?

(2017) Maryam Tidjani Alou et al.   Frontiers in Microbiology

Geography, Ethnicity or Subsistence-Specific Variations in Human Microbiome Composition and Diversity

(2017) Vinod K. Gupta et al.   Frontiers in Microbiology

Cross Talk: The Microbiota and Neurodevelopmental Disorders

(2017) John R. Kelly et al.   Frontiers in Neuroscience

Towards an Integrative Understanding of Diet–Host–Gut Microbiome Interactions

(2017) Mark N. Read et al.   Frontiers in Immunology

Detrimental Impact of Microbiota-Accessible Carbohydrate-Deprived Diet on Gut and Immune Homeostasis: An Overview

(2017) Claire Immediato Daïen et al.   Frontiers in Immunology

Resistant starch can improve insulin sensitivity independently of the gut microbiota

(2017) Laure B. Bindels et al.   Microbiome

Obesity and microbiota: an example of an intricate relationship

(2017) Sabrina Duranti et al.   Genes and Nutrition

An insider's perspective: Bacteroides as a window into the microbiome

(2017) Aaron G. Wexler et al.   Nature Microbiology

Microbiota in anorexia nervosa: The triangle between bacterial species, metabolites and psychological tests

(2017) Francesca Borgo et al.   PLoS One

Microbiome restoration diet improves digestion, cognition and physical and emotional wellbeing

(2017) Kate Lawrence et al.   PLoS One

Bifidobacterium breve with α-linolenic acid alters the composition, distribution and transcription factor activity associated with metabolism and absorption of fat

(2017) Elaine Patterson et al.   Scientific Reports

Elucidating the richness of bacterial groups in the gut of Nicobarese tribal community – Perspective on their lifestyle transition

(2016) Maile Anwesh et al.   ANAEROBE

Insights into human evolution from ancient and contemporary microbiome studies

(2016) Stephanie L Schnorr et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Formation of propionate and butyrate by the human colonic microbiota

(2016) Petra Louis et al.   ENVIRONMENTAL MICROBIOLOGY

The prebiotic concept and human health: a changing landscape with riboflavin as a novel prebiotic candidate?

(2016) R E Steinert et al.   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Tumour-associated and non-tumour-associated microbiota in colorectal cancer

(2016) Burkhardt Flemer et al.   GUT

Fungal microbiota dysbiosis in IBD

(2016) Harry Sokol et al.   GUT

An ATP Binding Cassette Transporter Mediates the Uptake of α-(1,6)-Linked Dietary Oligosaccharides inBifidobacteriumand Correlates with Competitive Growth on These Substrates

(2016) Morten Ejby et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease

(2016) Darrell W. Cockburn et al.   JOURNAL OF MOLECULAR BIOLOGY

Foodomics as part of the host-microbiota-exposome interplay

(2016) Lorenza Putignani et al.   Journal of Proteomics

Diet, gut microbes, and the pathogenesis of inflammatory bowel diseases

(2016) Kyle T. Dolan et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Interplay between diet, gut microbiota, epigenetic events, and colorectal cancer

(2016) Scott J. Bultman   MOLECULAR NUTRITION & FOOD RESEARCH

Persistent microbiome alterations modulate the rate of post-dieting weight regain

(2016) Christoph A. Thaiss et al.   NATURE

The microbiome and innate immunity

(2016) Christoph A. Thaiss et al.   NATURE

Acetate mediates a microbiome–brain–β-cell axis to promote metabolic syndrome

(2016) Rachel J. Perry et al.   NATURE

Diet-induced extinctions in the gut microbiota compound over generations

(2016) Erica D. Sonnenburg et al.   NATURE

A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice

(2016) Hubert Plovier et al.   NATURE MEDICINE

The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism

(2016) Peter Spanogiannopoulos et al.   NATURE REVIEWS MICROBIOLOGY

The Human Intestinal Microbiome in Health and Disease

(2016) Susan V. Lynch et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Role of Probiotics on the Microbiota

(2016) Esther Nova et al.   NUTRITION IN CLINICAL PRACTICE

Childhood undernutrition, the gut microbiota, and microbiota-directed therapeutics

(2016) L. V. Blanton et al.   SCIENCE

The Fiber Gap and the Disappearing Gut Microbiome: Implications for Human Nutrition

(2016) Edward C. Deehan et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Gut microbiota role in dietary protein metabolism and health-related outcomes: The two sides of the coin

(2016) Kevin J. Portune et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

The Intestinal Microbiota in Metabolic Disease

(2016) Anni Woting et al.   Nutrients

Probiotics and Prebiotics: Present Status and Future Perspectives on Metabolic Disorders

(2016) Ji Yoo et al.   Nutrients

Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles and gastrointestinal complaints

(2016) Isabelle Mack et al.   Scientific Reports

Gut Microbiome of Coexisting BaAka Pygmies and Bantu Reflects Gradients of Traditional Subsistence Patterns

(2016) Andres Gomez et al.   Cell Reports

Dietary fat and gut microbiota interactions determine diet-induced obesity in mice

(2016) Raphaela Kübeck et al.   Molecular Metabolism

Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes

(2016) Kevin R. Theis et al.   mSystems

Erratum: Erratum: Obesity changes the human gut mycobiome

(2016) M. Mar Rodríguez et al.   Scientific Reports

Fecal metabolome of the Hadza hunter-gatherers: a host-microbiome integrative view

(2016) Silvia Turroni et al.   Scientific Reports

High fat diet drives obesity regardless the composition of gut microbiota in mice

(2016) Sylvie Rabot et al.   Scientific Reports

Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides

(2015) Audrey Rivière et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling

(2015) Robert Caesar et al.   Cell Metabolism

Bioactivation of Phytoestrogens: Intestinal Bacteria and Health

(2015) J. M. Landete et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Metagenome Sequencing of the Hadza Hunter-Gatherer Gut Microbiota

(2015) Simone Rampelli et al.   CURRENT BIOLOGY

Short-Chain Fatty Acids Protect Against High-Fat Diet–Induced Obesity via a PPARγ-Dependent Switch From Lipogenesis to Fat Oxidation

(2015) Gijs den Besten et al.   DIABETES

Diet in the Pathogenesis and Treatment of Inflammatory Bowel Diseases

(2015) Dale Lee et al.   GASTROENTEROLOGY

Hydrogen Sulfide Protects from Colitis and Restores Intestinal Microbiota Biofilm and Mucus Production

(2015) Jean-Paul Motta et al.   INFLAMMATORY BOWEL DISEASES

Red Meat and Colorectal Cancer: A Quantitative Update on the State of the Epidemiologic Science

(2015) Dominik D. Alexander et al.   JOURNAL OF THE AMERICAN COLLEGE OF NUTRITION

Ability of the gut microbiota to produce PUFA-derived bacterial metabolites: Proof of concept in germ-free versus conventionalized mice

(2015) Céline Druart et al.   MOLECULAR NUTRITION & FOOD RESEARCH

The importance of GLP-1 and PYY in resistant starch's effect on body fat in mice

(2015) June Zhou et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

(2015) Benoit Chassaing et al.   NATURE

Effects of dietary fat profile on gut permeability and microbiota and their relationships with metabolic changes in mice

(2015) Yan Y. Lam et al.   Obesity

Subsistence strategies in traditional societies distinguish gut microbiomes

(2015) Alexandra J. Obregon-Tito et al.   Nature Communications

The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

(2015) Inés Martínez et al.   Cell Reports

Variation in Rural African Gut Microbiota Is Strongly Correlated with Colonization by Entamoeba and Subsistence

(2015) Elise R. Morton et al.   PLoS Genetics

The microbiome of uncontacted Amerindians

(2015) J. C. Clemente et al.   Science Advances

Editorial: UV exposure and IBD - should more be done to demonstrate an association before trying to find its mechanism? Authors' reply

(2014) B. N. Limketkai et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Vitamin B 12 as a Modulator of Gut Microbial Ecology

(2014) Patrick H. Degnan et al.   Cell Metabolism

The Bacteroides fragilis Toxin Gene Is Prevalent in the Colon Mucosa of Colorectal Cancer Patients

(2014) Annemarie Boleij et al.   CLINICAL INFECTIOUS DISEASES

Modelling the emergent dynamics and major metabolites of the human colonic microbiota

(2014) Helen Kettle et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic distribution of three pathways for propionate production within the human gut microbiota

(2014) Nicole Reichardt et al.   ISME Journal

Microbial mucosal colonic shifts associated with the development of colorectal cancer reveal the presence of different bacterial and archaeal biomarkers

(2014) L. Mira-Pascual et al.   JOURNAL OF GASTROENTEROLOGY

Artificial sweeteners induce glucose intolerance by altering the gut microbiota

(2014) Jotham Suez et al.   NATURE

Evolution of Invasion in a Diverse Set of Fusobacterium Species

(2014) Abigail Manson McGuire et al.   mBio

Gut microbiome of the Hadza hunter-gatherers

(2014) Stephanie L. Schnorr et al.   Nature Communications

Description of urolithin production capacity from ellagic acid of two human intestinal Gordonibacter species

(2014) María V. Selma et al.   Food & Function

Modulation of the Gut Microbiota by Nutrients with Prebiotic and Probiotic Properties

(2014) Céline Druart et al.   Advances in Nutrition

Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans

(2013) Junhai Ou et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Hydrogen Sulfide Signaling in the Gastrointestinal Tract

(2013) David R. Linden   ANTIOXIDANTS & REDOX SIGNALING

An increase in theAkkermansiaspp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice

(2013) Na-Ri Shin et al.   GUT

High Residential Sun Exposure Is Associated With a Low Risk of Incident Crohnʼs Disease in the Prospective E3N Cohort

(2013) Prévost Jantchou et al.   INFLAMMATORY BOWEL DISEASES

Vitamin D Regulates the Gut Microbiome and Protects Mice from Dextran Sodium Sulfate–Induced Colitis

(2013) Jot Hui Ooi et al.   JOURNAL OF NUTRITION

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

(2013) Robert A Koeth et al.   NATURE MEDICINE

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

(2013) Abdessamad El Kaoutari et al.   NATURE REVIEWS MICROBIOLOGY

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2013) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

(2013) A. Everard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor

(2013) M. I. Smith et al.   SCIENCE

Gut microbiota controls adipose tissue expansion, gut barrier and glucose metabolism: novel insights into molecular targets and interventions using prebiotics

(2013) L. Geurts et al.   Beneficial Microbes

Long-term monitoring of the human intestinal microbiota composition

(2012) Mirjana Rajilić-Stojanović et al.   ENVIRONMENTAL MICROBIOLOGY

Transfer of Intestinal Microbiota From Lean Donors Increases Insulin Sensitivity in Individuals With Metabolic Syndrome

(2012) Anne Vrieze et al.   GASTROENTEROLOGY

Gut-derived lipopolysaccharide augments adipose macrophage accumulation but is not essential for impaired glucose or insulin tolerance in mice

(2012) Robert Caesar et al.   GUT

The type and quantity of dietary fat and carbohydrate alter faecal microbiome and short-chain fatty acid excretion in a metabolic syndrome ‘at-risk’ population

(2012) F Fava et al.   INTERNATIONAL JOURNAL OF OBESITY

Microbiota conservation and BMI signatures in adult monozygotic twins

(2012) Sebastian Tims et al.   ISME Journal

Capability of Lactobacillus plantarum IFPL935 To Catabolize Flavan-3-ol Compounds and Complex Phenolic Extracts

(2012) Fernando Sánchez-Patán et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Role of glutamate metabolism in bacterial responses towards acid and other stresses

(2012) C. Feehily et al.   JOURNAL OF APPLIED MICROBIOLOGY

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10 −/− mice

(2012) Suzanne Devkota et al.   NATURE

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

The gut microbiota in IBD

(2012) Chaysavanh Manichanh et al.   Nature Reviews Gastroenterology & Hepatology

Categorization of the gut microbiota: enterotypes or gradients?

(2012) Ian B. Jeffery et al.   NATURE REVIEWS MICROBIOLOGY

Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer

(2012) Weiguang Chen et al.   PLoS One

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization byBifidobacterium breve UCC2003

(2012) Mary O'Connell Motherway et al.   Microbial Biotechnology

Effect of grape polyphenols on lactic acid bacteria and bifidobacteria growth: Resistance and metabolism

(2011) Raquel Tabasco et al.   FOOD MICROBIOLOGY

Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii

(2011) M Million et al.   INTERNATIONAL JOURNAL OF OBESITY

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Transcriptional and functional analysis of galactooligosaccharide uptake by lacS in Lactobacillus acidophilus

(2011) J. M. Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

(2011) S. Greenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts

(2011) Eric C. Martens et al.   PLOS BIOLOGY

Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation

(2010) Jessica R. Sieber et al.   Annual Review of Microbiology

Broad Conservation of Milk Utilization Genes in Bifidobacterium longum subsp. infantis as Revealed by Comparative Genomic Hybridization

(2010) R. G. LoCascio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The proteolytic system of lactic acid bacteria revisited: a genomic comparison

(2010) Mengjin Liu et al.   BMC GENOMICS

Absence of intestinal microbiota does not protect mice from diet-induced obesity

(2010) Christine K. Fleissner et al.   BRITISH JOURNAL OF NUTRITION

Emerging role of hydrogen sulfide in colonic physiology and pathophysiology

(2010) Mekki Medani et al.   INFLAMMATORY BOWEL DISEASES

Equol: History, Chemistry, and Formation

(2010) Kenneth D. R. Setchell et al.   JOURNAL OF NUTRITION

Changes in Intestinal Bifidobacteria Levels Are Associated with the Inflammatory Response in Magnesium-Deficient Mice

(2010) Barbara D. Pachikian et al.   JOURNAL OF NUTRITION

Nonextractable polyphenols, usually ignored, are the major part of dietary polyphenols: A study on the Spanish diet

(2010) Sara Arranz et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides

(2010) David A. Sela et al.   TRENDS IN MICROBIOLOGY

Bioconversion of anthocyanin glycosides by Bifidobacteria and Lactobacillus

(2009) Marta Ávila et al.   FOOD RESEARCH INTERNATIONAL

The core gut microbiome, energy balance and obesity

(2009) Peter J. Turnbaugh et al.   JOURNAL OF PHYSIOLOGY-LONDON

Physiological and biochemical characterization of the two  -L-rhamnosidases of Lactobacillus plantarum NCC245

(2009) M. Avila et al.   MICROBIOLOGY-SGM

Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla

(2009) M. A. Mahowald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human gut microbiota in obesity and after gastric bypass

(2009) H. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of ApuB, an Extracellular Type II Amylopullulanase from Bifidobacterium breve UCC2003

(2008) M. O'Connell Motherway et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE