Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus
Authors
Keywords
-
Journal
Nature Communications
Volume 9, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-02-16
DOI
10.1038/s41467-018-03113-2
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
- (2017) Tao Yang et al. GENOME RESEARCH
- DeepChrome: deep-learning for predicting gene expression from histone modifications
- (2016) Ritambhara Singh et al. BIOINFORMATICS
- Convolutional neural network architectures for predicting DNA–protein binding
- (2016) Haoyang Zeng et al. BIOINFORMATICS
- Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks
- (2016) David R. Kelley et al. GENOME RESEARCH
- Image Super-Resolution Using Deep Convolutional Networks
- (2016) Chao Dong et al. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE
- Deep learning for computational biology
- (2016) Christof Angermueller et al. Molecular Systems Biology
- Mastering the game of Go with deep neural networks and tree search
- (2016) David Silver et al. NATURE
- Genome-wide mapping and analysis of chromosome architecture
- (2016) Anthony D. Schmitt et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences
- (2016) Daniel Quang et al. NUCLEIC ACIDS RESEARCH
- A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
- (2016) Anthony D. Schmitt et al. Cell Reports
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
- (2015) J. Fraser et al. Molecular Systems Biology
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Integrative analysis of haplotype-resolved epigenomes across human tissues
- (2015) Danny Leung et al. NATURE
- Deep learning
- (2015) Yann LeCun et al. NATURE
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
- (2015) Babak Alipanahi et al. NATURE BIOTECHNOLOGY
- Predicting effects of noncoding variants with deep learning–based sequence model
- (2015) Jian Zhou et al. NATURE METHODS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Cohesin-mediated interactions organize chromosomal domain architecture
- (2013) Sevil Sofueva et al. EMBO JOURNAL
- Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
- (2013) V. C. Seitan et al. GENOME RESEARCH
- On the stability of fractal globules
- (2013) Raoul D. Schram et al. JOURNAL OF CHEMICAL PHYSICS
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
- (2013) Siddarth Selvaraj et al. NATURE BIOTECHNOLOGY
- HiCNorm: removing biases in Hi-C data via Poisson regression
- (2012) Ming Hu et al. BIOINFORMATICS
- A map of the cis-regulatory sequences in the mouse genome
- (2012) Yin Shen et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
- (2011) Eitan Yaffe et al. NATURE GENETICS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started