Nascent RNA sequencing reveals distinct features in plant transcription
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Title
Nascent RNA sequencing reveals distinct features in plant transcription
Authors
Keywords
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Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 113, Issue 43, Pages 12316-12321
Publisher
Proceedings of the National Academy of Sciences
Online
2016-10-12
DOI
10.1073/pnas.1603217113
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- (2015) Sascha H.C. Duttke TRENDS IN BIOCHEMICAL SCIENCES
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- (2014) Alessandra M. Sullivan et al. Cell Reports
- Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription
- (2013) Michael T. Y. Lam et al. NATURE
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- (2013) H. Kwak et al. SCIENCE
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- (2011) Celina Costas et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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