Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during SustainedIn SituU(VI) Reduction

(2015) Ping Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments

(2015) Michael P. Thorgersen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction

(2015) Ping Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Sewage Reflects the Microbiomes of Human Populations

(2015) Ryan J. Newton et al.   mBio

Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors

(2015) Mark B. Smith et al.   mBio

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

(2015) Christopher L. Hemme et al.   Frontiers in Microbiology

Microbial diversity and metabolic networks in acid mine drainage habitats

(2015) Celia Méndez-García et al.   Frontiers in Microbiology

Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments

(2014) Meiying Xu et al.   ISME Journal

Which is more important for classifying microbial communities: who’s there or what they can do?

(2014) Zhenjiang Xu et al.   ISME Journal

Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

(2014) Kateryna Zhalnina et al.   MICROBIAL ECOLOGY

GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis

(2014) Qichao Tu et al.   Molecular Ecology Resources

Consequences of biodiversity loss for litter decomposition across biomes

(2014) I. Tanya Handa et al.   NATURE

Machine Learning Techniques Accurately Classify Microbial Communities by Bacterial Vaginosis Characteristics

(2014) Daniel Beck et al.   PLoS One

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contrasting microbial functional genes in two distinct saline-alkali and slightly acidic oil-contaminated sites

(2014) Yuting Liang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning

(2014) Sascha Krause et al.   Frontiers in Microbiology

Functional microbial diversity explains groundwater chemistry in a pristine aquifer

(2013) Theodore M Flynn et al.   BMC MICROBIOLOGY

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system

(2013) Jessica L Metcalf et al.   eLife

Microbial Functional Gene Diversity with a Shift of Subsurface Redox Conditions duringIn SituUranium Reduction

(2012) Yuting Liang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Applications of functional gene microarrays for profiling microbial communities

(2012) Zhili He et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbial and functional diversity of a subterrestrial high pH groundwater associated to serpentinization

(2012) Igor Tiago et al.   ENVIRONMENTAL MICROBIOLOGY

GeoChip-Based Analysis of Microbial Functional Gene Diversity in a Landfill Leachate-Contaminated Aquifer

(2012) Zhenmei Lu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities

(2012) J. E. Kostka et al.   JOURNAL OF BACTERIOLOGY

Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease

(2012) Eliseo Papa et al.   PLoS One

The functional role of producer diversity in ecosystems

(2011) Bradley J. Cardinale et al.   AMERICAN JOURNAL OF BOTANY

Dynamics of Microbial Community Composition and Function during In Situ Bioremediation of a Uranium-Contaminated Aquifer

(2011) Joy D. Van Nostrand et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site

(2011) Stefan J. Green et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of functional gene microarrays for microbial community analysis

(2011) Zhili He et al.   CURRENT OPINION IN BIOTECHNOLOGY

Functional and phylogenetic diversity as predictors of biodiversity–ecosystem-function relationships

(2011) Dan F. B. Flynn et al.   ECOLOGY

AUC-RF: A New Strategy for Genomic Profiling with Random Forest

(2011) M. Luz Calle et al.   HUMAN HEREDITY

Impaired microbial activity caused by metal pollution: A field study in a deactivated uranium mining area

(2011) Sara Cristina Antunes et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Significant Association between Sulfate-Reducing Bacteria and Uranium-Reducing Microbial Communities as Revealed by a Combined Massively Parallel Sequencing-Indicator Species Approach

(2010) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Denitrifying Bacteria Isolated from Terrestrial Subsurface Sediments Exposed to Mixed-Waste Contamination

(2010) S. J. Green et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation and Physiology of Bacteria from Contaminated Subsurface Sediments

(2010) A. Bollmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Links between global taxonomic diversity, ecological diversity and the expansion of vertebrates on land

(2010) S. Sahney et al.   Biology Letters

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2

(2010) Zhili He et al.   ECOLOGY LETTERS

Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation

(2010) Meiying Xu et al.   ISME Journal

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

(2010) Zhili He et al.   ISME Journal

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

(2010) Christopher L Hemme et al.   ISME Journal

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Interactions of the carbon cycle, human activity, and the climate system: a research portfolio

(2010) Josep G Canadell et al.   Current Opinion in Environmental Sustainability

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer

(2009) Joy D. Van Nostrand et al.   ENVIRONMENTAL MICROBIOLOGY

Functional Diversity and Electron Donor Dependence of Microbial Populations Capable of U(VI) Reduction in Radionuclide-Contaminated Subsurface Sediments

(2008) D. M. Akob et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Global Map of Human Impact on Marine Ecosystems

(2008) Benjamin S. Halpern et al.   SCIENCE