Microbiota and Metatranscriptome Changes Accompanying the Onset of Gingivitis

Poor Response to Periodontal Treatment May Predict Future Cardiovascular Disease

(2017) A. Holmlund et al.   JOURNAL OF DENTAL RESEARCH

Improved accuracy in periodontal pocket depth measurement using optical coherence tomography

(2017) Sul-Hee Kim et al.   Journal of Periodontal and Implant Science

Leptotrichia species in human infections II

(2017) Emenike R. K. Eribe et al.   Journal of Oral Microbiology

Microbiota-based Signature of Gingivitis Treatments: A Randomized Study

(2016) Shi Huang et al.   Scientific Reports

Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent communities in periodontitis

(2016) Shareef M. Dabdoub et al.   Scientific Reports

Secreted gingipains from Porphyromonas gingivalis colonies exert potent immunomodulatory effects on human gingival fibroblasts

(2015) Torbjörn Bengtsson et al.   MICROBIOLOGICAL RESEARCH

Cleavage of Host Cytokeratin-6 by Lysine-Specific Gingipain Induces Gingival Inflammation in Periodontitis Patients

(2015) Salunya Tancharoen et al.   PLoS One

Structural characterisation of the virulence-associated protein VapG from the horse pathogen Rhodococcus equi

(2015) Tebekeme Okoko et al.   VETERINARY MICROBIOLOGY

Dynamic Changes in the Subgingival Microbiome and Their Potential for Diagnosis and Prognosis of Periodontitis

(2015) Baochen Shi et al.   mBio

Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis

(2015) Susan Yost et al.   Genome Medicine

Functional biomarkers for chronic periodontitis and insights into the roles of Prevotella nigrescens and Fusobacterium nucleatum; a metatranscriptome analysis

(2015) Szymon P Szafrański et al.   npj Biofilms and Microbiomes

High-Resolution Taxonomic Profiling of the Subgingival Microbiome for Biomarker Discovery and Periodontitis Diagnosis

(2014) Szymon P. Szafranski et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Predictive modeling of gingivitis severity and susceptibility via oral microbiota

(2014) Shi Huang et al.   ISME Journal

Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients

(2014) Yan Li et al.   ISME Journal

Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis

(2014) Ana E Duran-Pinedo et al.   ISME Journal

Structure and Mechanism of Cysteine Peptidase Gingipain K (Kgp), a Major Virulence Factor ofPorphyromonas gingivalisin Periodontitis

(2014) Iñaki de Diego et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Role of Leukotriene A4 Hydrolase Aminopeptidase in the Pathogenesis of Emphysema

(2014) M. Paige et al.   JOURNAL OF IMMUNOLOGY

Metatranscriptomics of the Human Oral Microbiome during Health and Disease

(2014) P. Jorth et al.   mBio

Actinomycosis: etiology, clinical features, diagnosis, treatment, and management

(2014) Tristan Ferry et al.   Infection and Drug Resistance

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation

(2013) Loreto Abusleme et al.   ISME Journal

Calculating Sample Size Estimates for RNA Sequencing Data

(2013) Steven N. Hart et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Bacterial Community Development in Experimental Gingivitis

(2013) James O. Kistler et al.   PLoS One

Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease

(2013) Jinfeng Wang et al.   Scientific Reports

YdfH Identified as a Repressor ofrspAby the Use of Reduced GenomeEscherichia coliMGF-01

(2012) Yuri SAKIHAMA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Leptotrichia Bacteremia in Patients Receiving High-Dose Chemotherapy

(2011) M. R. Couturier et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis

(2011) Shi Huang et al.   BMC Oral Health

Two Spx Proteins Modulate Stress Tolerance, Survival, and Virulence in Streptococcus mutans

(2010) J. K. Kajfasz et al.   JOURNAL OF BACTERIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Oral multispecies biofilm development and the key role of cell–cell distance

(2010) Paul E. Kolenbrander et al.   NATURE REVIEWS MICROBIOLOGY

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

(2010) T. Chen et al.   Database-The Journal of Biological Databases and Curation

Epithelial cell pro-inflammatory cytokine response differs across dental plaque bacterial species

(2009) Panagiota G. Stathopoulou et al.   JOURNAL OF CLINICAL PERIODONTOLOGY