Analysis of 19 Highly Conserved Vibrio cholerae Bacteriophages Isolated from Environmental and Patient Sources Over a Twelve-Year Period

Contemporary Phage Biology: From Classic Models to New Insights

(2018) Gal Ofir et al.   CELL

Genomic Characterization of Sixteen Yersinia enterocolitica-Infecting Podoviruses of Pig Origin

(2018) Mabruka Salem et al.   Viruses-Basel

Genomic history of the seventh pandemic of cholera in Africa

(2017) François-Xavier Weill et al.   SCIENCE

Integrated view ofVibrio choleraein the Americas

(2017) Daryl Domman et al.   SCIENCE

Analysis of the CRISPR-Cas system in bacteriophages active on epidemic strains of Vibrio cholerae in Bangladesh

(2017) Iftekhar Bin Naser et al.   Scientific Reports

A highly specific phage defense system is a conserved feature of the Vibrio cholerae mobilome

(2017) Brendan J. O’Hara et al.   PLoS Genetics

Deciphering the virus-to-prokaryote ratio (VPR): insights into virus-host relationships in a variety of ecosystems

(2016) Kaarle J. Parikka et al.   BIOLOGICAL REVIEWS

Phenotypic and genetic characteristics of Vibrio cholerae O1 carrying Haitian ctxB and attributes of classical and El Tor biotypes isolated from Silvassa, India

(2016) Moon Moon Das et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Origins of the current seventh cholera pandemic

(2016) Dalong Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut Microbial Succession Follows Acute Secretory Diarrhea in Humans

(2015) Lawrence A. David et al.   mBio

Updated Global Burden of Cholera in Endemic Countries

(2015) Mohammad Ali et al.   PLoS Neglected Tropical Diseases

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages

(2015) Simon Roux et al.   Frontiers in Microbiology

Widespread epidemic cholera caused by a restricted subset of Vibrio cholerae clones

(2014) S. Moore et al.   CLINICAL MICROBIOLOGY AND INFECTION

A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity

(2013) Kimberley D. Seed et al.   NATURE

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Phase Variable O Antigen Biosynthetic Genes Control Expression of the Major Protective Antigen and Bacteriophage Receptor in Vibrio cholerae O1

(2012) Kimberley D. Seed et al.   PLoS Pathogens

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Evidence for several waves of global transmission in the seventh cholera pandemic

(2011) Ankur Mutreja et al.   NATURE

Evidence of a Dominant Lineage of Vibrio cholerae-Specific Lytic Bacteriophages Shed by Cholera Patients over a 10-Year Period in Dhaka, Bangladesh

(2011) K. D. Seed et al.   mBio

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Genomic evolution of Vibrio cholerae

(2010) Yong-Joon Cho et al.   CURRENT OPINION IN MICROBIOLOGY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Evolution of new variants of Vibrio cholerae O1

(2009) Ashrafus Safa et al.   TRENDS IN MICROBIOLOGY