Metagenomic analysis of the RNA fraction of the fecal virome indicates high diversity in pigs infected by porcine endemic diarrhea virus in the United States

Detection of a novel sapelovirus in central nervous tissue of pigs with polioencephalomyelitis in the USA

(2017) P. H. E. Arruda et al.   Transboundary and Emerging Diseases

Pathogenesis comparison between the United States porcine epidemic diarrhoea virus prototype and S-INDEL-variant strains in conventional neonatal piglets

(2016) Qi Chen et al.   JOURNAL OF GENERAL VIROLOGY

Evolution, antigenicity and pathogenicity of global porcine epidemic diarrhea virus strains

(2016) Chun-Ming Lin et al.   VIRUS RESEARCH

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

The Intestinal Eukaryotic Virome in Healthy and Diarrhoeic Neonatal Piglets

(2016) Oskar E. Karlsson et al.   PLoS One

Genomic characterization of a US porcine kobuvirus strain

(2015) Xinsheng Liu et al.   ARCHIVES OF MICROBIOLOGY

Porcine Epidemic Diarrhea Virus Infection Induced the Unbalance of Gut Microbiota in Piglets

(2015) Shuyun Liu et al.   CURRENT MICROBIOLOGY

Antigenic Relationships among Porcine Epidemic Diarrhea Virus and Transmissible Gastroenteritis Virus Strains

(2015) Chun-Ming Lin et al.   JOURNAL OF VIROLOGY

Changes in the Swine Gut Microbiota in Response to Porcine Epidemic Diarrhea Infection

(2015) Hyeon-Woo Koh et al.   MICROBES AND ENVIRONMENTS

Porcine epidemic diarrhea virus: An emerging and re-emerging epizootic swine virus

(2015) Changhee Lee   Virology Journal

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Viral metagenomics analysis demonstrates the diversity of viral flora in piglet diarrhoeic faeces in China

(2014) B. Zhang et al.   JOURNAL OF GENERAL VIROLOGY

Full-Length Genomic Analysis of Korean Porcine Sapelovirus Strains

(2014) Kyu-Yeol Son et al.   PLoS One

Pathogenesis of porcine epidemic diarrhea virus isolate (US/Iowa/18984/2013) in 3-week-old weaned pigs

(2014) D.M. Madson et al.   VETERINARY MICROBIOLOGY

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Isolation and Characterization of Porcine Epidemic Diarrhea Viruses Associated with the 2013 Disease Outbreak among Swine in the United States

(2013) Q. Chen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Emergence of Porcine epidemic diarrhea virus in the United States: clinical signs, lesions, and viral genomic sequences

(2013) Gregory W. Stevenson et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Diversity of viruses detected by deep sequencing in pigs from a common background

(2012) Kelly M. Lager et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Complete Genome Sequence of Porcine Kobuvirus Strain WUH1

(2012) Y. Lin et al.   JOURNAL OF VIROLOGY

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

The Fecal Virome of Pigs on a High-Density Farm

(2011) T. Shan et al.   JOURNAL OF VIROLOGY

Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae

(2008) Gábor Reuter et al.   ARCHIVES OF VIROLOGY