The Intestinal Eukaryotic Virome in Healthy and Diarrhoeic Neonatal Piglets

Infection of farmed pigs with porcine kobuviruses in Italy

(2015) Ilaria Di Bartolo et al.   ARCHIVES OF VIROLOGY

Viral diversity in swine intestinal mucus used for the manufacture of heparin as analyzed by high-throughput sequencing

(2015) Marine Dumarest et al.   BIOLOGICALS

Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond

(2015) Simona Kraberger et al.   INFECTION GENETICS AND EVOLUTION

Pathological and bacteriological characterization of neonatal porcine diarrhoea of uncertain aetiology

(2015) Jenny Larsson et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage

(2015) Tung Gia Phan et al.   VIROLOGY

Unexplained diarrhoea in HIV-1 infected individuals

(2014) Bas B Oude Munnink et al.   BMC INFECTIOUS DISEASES

The Virome in Mammalian Physiology and Disease

(2014) Herbert W. Virgin   CELL

Neonatal Piglet Diarrhoea Associated with Enteroadherent Enterococcus hirae

(2014) J. Larsson et al.   JOURNAL OF COMPARATIVE PATHOLOGY

Viral metagenomics analysis demonstrates the diversity of viral flora in piglet diarrhoeic faeces in China

(2014) B. Zhang et al.   JOURNAL OF GENERAL VIROLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

The General Composition of the Faecal Virome of Pigs Depends on Age, but Not on Feeding with a Probiotic Bacterium

(2014) Jana Sachsenröder et al.   PLoS One

Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

(2014) Peter Skewes-Cox et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Microbiological, pathological and histological findings in four Danish pig herds affected by a new neonatal diarrhoea syndrome

(2013) Hanne Kongsted et al.   BMC Veterinary Research

The Origin of Biased Sequence Depth in Sequence-Independent Nucleic Acid Amplification and Optimization for Efficient Massive Parallel Sequencing

(2013) Toon Rosseel et al.   PLoS One

New viruses in veterinary medicine, detected by metagenomic approaches

(2013) Sándor Belák et al.   VETERINARY MICROBIOLOGY

Identification and molecular characterization of porcine kobuvirus in U. S. swine

(2013) Harsha Verma et al.   VIRUS GENES

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

(2012) Karyna Rosario et al.   ARCHIVES OF VIROLOGY

Detection and Molecular Characterization of Porcine Picobirnavirus in Feces of Domestic Pigs from Kolkata, India

(2012) Balasubramanian Ganesh et al.   Indian Journal of Virology

Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta)

(2012) K. Rosario et al.   JOURNAL OF GENERAL VIROLOGY

Detection and molecular characterization of Porcine astrovirus strains associated with swine diarrhea

(2012) Sunil K. Mor et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Diversity of viruses detected by deep sequencing in pigs from a common background

(2012) Kelly M. Lager et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Simultaneous Identification of DNA and RNA Viruses Present in Pig Faeces Using Process-Controlled Deep Sequencing

(2012) Jana Sachsenröder et al.   PLoS One

The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome

(2012) Dirk Gevers et al.   PLOS BIOLOGY

Isolation and characterization of the first Chinese porcine sapelovirus strain

(2011) Daoliang Lan et al.   ARCHIVES OF VIROLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

First detection of kobuvirus in farm animals in Brazil and the Netherlands

(2011) Aline F. Barry et al.   INFECTION GENETICS AND EVOLUTION

Evaluation of High-Throughput Sequencing for Identifying Known and Unknown Viruses in Biological Samples

(2011) Justine Cheval et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Complete Genome Sequence of a Novel Species of Porcine Bocavirus, PBoV5

(2011) B. Li et al.   JOURNAL OF VIROLOGY

The Fecal Virome of Pigs on a High-Density Farm

(2011) T. Shan et al.   JOURNAL OF VIROLOGY

Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes

(2011) Eric Delwart et al.   VIRUS RESEARCH

Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea

(2010) Seong-Jun Park et al.   ARCHIVES OF VIROLOGY

Picobirnavirus causes persistent infection in pigs

(2010) Laura C. Martínez et al.   INFECTION GENETICS AND EVOLUTION

Detection of a Novel Astrovirus in Brain Tissue of Mink Suffering from Shaking Mink Syndrome by Use of Viral Metagenomics

(2010) Anne-Lie Blomström et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Porcine kobuvirus from pig stool in Korea

(2010) Dong-Jun An et al.   VIRUS GENES

The First Chinese Porcine Sapovirus Strain That Contributed to an Outbreak of Gastroenteritis in Piglets

(2008) W. Zhang et al.   JOURNAL OF VIROLOGY

Metagenomics

(2008) Philip Hugenholtz et al.   NATURE