Blind testing of cross-linking/mass spectrometry hybrid methods in CASP11

Protein contact prediction by integrating joint evolutionary coupling analysis and supervised learning

(2015) Jianzhu Ma et al.   BIOINFORMATICS

Protein structure prediction guided by crosslinking restraints – A systematic evaluation of the impact of the crosslinking spacer length

(2015) Tommy Hofmann et al.   METHODS

Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology

(2015) Adam Belsom et al.   MOLECULAR & CELLULAR PROTEOMICS

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

(2015) Andrej Sali et al.   STRUCTURE

Determining Protein Complex Structures Based on a Bayesian Model ofin VivoFörster Resonance Energy Transfer (FRET) Data

(2014) Massimiliano Bonomi et al.   MOLECULAR & CELLULAR PROTEOMICS

A mass spectrometry–based hybrid method for structural modeling of protein complexes

(2014) Argyris Politis et al.   NATURE METHODS

Genetically Encoded Chemical Probes in Cells Reveal the Binding Path of Urocortin-I to CRF Class B GPCR

(2013) Irene Coin et al.   CELL

A Pseudo-Atomic Model for the Capsid Shell of Bacteriophage Lambda Using Chemical Cross-Linking/Mass Spectrometry and Molecular Modeling

(2013) Pragya Singh et al.   JOURNAL OF MOLECULAR BIOLOGY

Cross-Link Guided Molecular Modeling with ROSETTA

(2013) Abdullah Kahraman et al.   PLoS One

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era

(2013) H. Kamisetty et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessment of CASP10 contact-assisted predictions

(2013) Todd J. Taylor et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Critical assessment of methods of protein structure prediction (CASP) - round x

(2013) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Integrative Structural Biology

(2013) A. B. Ward et al.   SCIENCE

Mapping the Structural Topology of the Yeast 19S Proteasomal Regulatory Particle Using Chemical Cross-linking and Probabilistic Modeling

(2012) Athit Kao et al.   MOLECULAR & CELLULAR PROTEOMICS

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

(2012) Thomas Walzthoeni et al.   NATURE METHODS

Xwalk: computing and visualizing distances in cross-linking experiments

(2011) Abdullah Kahraman et al.   BIOINFORMATICS

Architecture of the RNA polymerase II–TFIIF complex revealed by cross-linking and mass spectrometry

(2010) Zhuo Angel Chen et al.   EMBO JOURNAL

RosettaEPR: An integrated tool for protein structure determination from sparse EPR data

(2010) Stephanie J. Hirst et al.   JOURNAL OF STRUCTURAL BIOLOGY

The beginning of a beautiful friendship: Cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

(2010) Juri Rappsilber   JOURNAL OF STRUCTURAL BIOLOGY

NMR Structure Determination for Larger Proteins Using Backbone-Only Data

(2010) S. Raman et al.   SCIENCE

EM-Fold: De Novo Folding of α-Helical Proteins Guided by Intermediate-Resolution Electron Microscopy Density Maps

(2009) Steffen Lindert et al.   STRUCTURE

Integration of Small-Angle X-Ray Scattering Data into Structural Modeling of Proteins and Their Assemblies

(2008) Friedrich Förster et al.   JOURNAL OF MOLECULAR BIOLOGY

De Novo High-Resolution Protein Structure Determination from Sparse Spin-Labeling EPR Data

(2008) Nathan Alexander et al.   STRUCTURE