Proteomic evidence of dietary sources in ancient dental calculus

A guide to ancient protein studies

(2018) Jessica Hendy et al.   Nature Ecology & Evolution

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus

(2017) Laura S. Weyrich et al.   NATURE

Dental calculus: the calcified biofilm and its role in disease development

(2017) Aliye Akcalı et al.   PERIODONTOLOGY 2000

Open sesame: Identification of sesame oil and oil soot ink in organic deposits of Tang Dynasty lamps from Astana necropolis in China

(2017) Anna Shevchenko et al.   PLoS One

New criteria for the molecular identification of cereal grains associated with archaeological artefacts

(2017) Andre Carlo Colonese et al.   Scientific Reports

Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus

(2016) Andrew T. Ozga et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Diet and environment 1.2 million years ago revealed through analysis of dental calculus from Europe’s oldest hominin at Sima del Elefante, Spain

(2016) Karen Hardy et al.   NATURWISSENSCHAFTEN

Dental calculus reveals Mesolithic foragers in the Balkans consumed domesticated plant foods

(2016) Emanuela Cristiani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of a dairy product in the grass woven basket from Gumugou Cemetery (3800 BP, northwestern China)

(2016) Mingsi Xie et al.   QUATERNARY INTERNATIONAL

Protein sequences bound to mineral surfaces persist into deep time

(2016) Beatrice Demarchi et al.   eLife

Diet and environment 1.2 million years ago revealed through analysis of dental calculus from Europe’s oldest hominin at Sima del Elefante, Spain

(2016) Karen Hardy et al.   Science of Nature

Identification of the earliest collagen- and plant-based coatings from Neolithic artefacts (Nahal Hemar cave, Israel)

(2016) Caroline Solazzo et al.   Scientific Reports

Differentiating dietary and non-dietary microfossils extracted from human dental calculus: the importance of sweet potato to ancient diet on Rapa Nui

(2015) Monica Tromp et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

The need to revisit published data: A concept and framework for complementary proteomics

(2015) Tao Zhou et al.   PROTEOMICS

Gel-aided sample preparation (GASP)-A simplified method for gel-assisted proteomic sample generation from protein extracts and intact cells

(2015) Roman Fischer et al.   PROTEOMICS

Proteomics evidence for kefir dairy in Early Bronze Age China

(2014) Yimin Yang et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Pathogens and host immunity in the ancient human oral cavity

(2014) Christina Warinner et al.   NATURE GENETICS

A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome

(2014) C. Warinner et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Dental Calculus Reveals Unique Insights into Food Items, Cooking and Plant Processing in Prehistoric Central Sudan

(2014) Stephen Buckley et al.   PLoS One

Unlocking Ancient Protein Palimpsests

(2014) E. Cappellini et al.   SCIENCE

Direct evidence of milk consumption from ancient human dental calculus

(2014) C. Warinner et al.   Scientific Reports

Improving Peptide Identification Sensitivity in Shotgun Proteomics by Stratification of Search Space

(2013) Gelio Alves et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics identifies the composition and manufacturing recipe of the 2500-year old sourdough bread from Subeixi cemetery in China

(2013) Anna Shevchenko et al.   Journal of Proteomics

Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions

(2013) Christina J Adler et al.   NATURE GENETICS

Proteomics analysis of ancient food vessel stitching reveals >4000-year-old milk protein

(2013) Michael Buckley et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

New insights into the consumption of maize and other food plants in the pre-Columbian Caribbean from starch grains trapped in human dental calculus

(2012) Hayley L. Mickleburgh et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Individual Differences in AMY1 Gene Copy Number, Salivary α-Amylase Levels, and the Perception of Oral Starch

(2010) Abigail L. Mandel et al.   PLoS One

Microfossils in calculus demonstrate consumption of plants and cooked foods in Neanderthal diets (Shanidar III, Iraq; Spy I and II, Belgium)

(2010) A. G. Henry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

(2010) T. Chen et al.   Database-The Journal of Biological Databases and Curation

Current approaches for global post-translational modification discovery and mass spectrometric analysis

(2008) Michael D. Hoffman et al.   ANALYTICA CHIMICA ACTA

Identification of Protein Remains in Archaeological Potsherds by Proteomics

(2008) Caroline Solazzo et al.   ANALYTICAL CHEMISTRY

Whey fermentation by thermophilic lactic acid bacteria: Evolution of carbohydrates and protein content

(2008) Micaela Pescuma et al.   FOOD MICROBIOLOGY

Starch grains on human teeth reveal early broad crop diet in northern Peru

(2008) D. R. Piperno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA