Select and resequence reveals relative fitness of bacteria in symbiotic and free-living environments

Transcriptomic basis of genome by genome variation in a legume-rhizobia mutualism

(2017) Liana T. Burghardt et al.   MOLECULAR ECOLOGY

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

The dynamics of molecular evolution over 60,000 generations

(2017) Benjamin H. Good et al.   NATURE

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Strain profiling and epidemiology of bacterial species from metagenomic sequencing

(2017) Davide Albanese et al.   Nature Communications

Metapopulation dominance and genomic-island acquisition ofBradyrhizobiumwith superior catabolic capabilities

(2016) Amanda C. Hollowell et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergent local adaptation to climate in distantly related conifers

(2016) S. Yeaman et al.   SCIENCE

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Experimental Evolution as an Underutilized Tool for Studying Beneficial Animal–Microbe Interactions

(2016) Kim L. Hoang et al.   Frontiers in Microbiology

Adaptation in Natural Microbial Populations

(2015) Britt Koskella et al.   Annual Review of Ecology Evolution and Systematics

Sporadic, Global Linkage Disequilibrium Between Unlinked Segregating Sites

(2015) D. A. Skelly et al.   GENETICS

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

(2015) Anthony Long et al.   NATURE REVIEWS GENETICS

Synthetic microbial communities

(2014) Tobias Großkopf et al.   CURRENT OPINION IN MICROBIOLOGY

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation

(2014) C Schlötterer et al.   HEREDITY

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Knowing your friends and foes - plant receptor-like kinases as initiators of symbiosis or defence

(2014) Meritxell Antolín-Llovera et al.   NEW PHYTOLOGIST

Promises and limitations of hitchhiking mapping

(2013) Sergey V Nuzhdin et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Maximum Likelihood Estimation of Frequencies of Known Haplotypes from Pooled Sequence Data

(2013) D. Kessner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

(2013) Tim van Opijnen et al.   NATURE REVIEWS MICROBIOLOGY

Coevolutionary genetic variation in the legume-rhizobium transcriptome

(2012) KATY D. HEATH et al.   MOLECULAR ECOLOGY

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Single-strain inoculation may create spurious correlations between legume fitness and rhizobial fitness

(2012) E. Toby Kiers et al.   NEW PHYTOLOGIST

Widespread fitness alignment in the legume-rhizobium symbiosis

(2012) Maren L. Friesen   NEW PHYTOLOGIST

A Medicago truncatula Tobacco Retrotransposon Insertion Mutant Collection with Defects in Nodule Development and Symbiotic Nitrogen Fixation

(2012) C. I. Pislariu et al.   PLANT PHYSIOLOGY

The Rules of Engagement in the Legume-Rhizobial Symbiosis

(2011) Giles E.D. Oldroyd et al.   Annual Review of Genetics

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Life Histories of Symbiotic Rhizobia and Mycorrhizal Fungi

(2011) R. Ford Denison et al.   CURRENT BIOLOGY

The Medicago genome provides insight into the evolution of rhizobial symbioses

(2011) Nevin D. Young et al.   NATURE

Failure to fix nitrogen by non-reproductive symbiotic rhizobia triggers host sanctions that reduce fitness of their reproductive clonemates

(2011) R. Oono et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Characterization and functional analysis of seven flagellin genes in Rhizobium leguminosarum bv. viciae

(2010) Dinah D Tambalo et al.   BMC MICROBIOLOGY

ABC Transporters Involved in Export of Cell Surface Glycoconjugates

(2010) L. Cuthbertson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Identification of a novel ABC transporter required for desiccation tolerance, and biofilm formation inRhizobium leguminosarumbv.viciae3841

(2009) Elizabeth M. Vanderlinde et al.   FEMS MICROBIOLOGY ECOLOGY