Combining population genomics and fitness QTLs to identify the genetics of local adaptation inArabidopsis thaliana

Genetic basis of photosynthetic responses to cold in two locally adapted populations of Arabidopsis thaliana

(2017) Christopher G Oakley et al.   JOURNAL OF EXPERIMENTAL BOTANY

Effects of Gene Action, Marker Density, and Timing of Selection on the Performance of Landscape Genomic Scans of Local Adaptation

(2017) Jeremy B Yoder et al.   JOURNAL OF HEREDITY

Topological features of a gene co-expression network predict patterns of natural diversity in environmental response

(2017) David L. Des Marais et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

SweepFinder2: increased sensitivity, robustness and flexibility

(2016) Michael DeGiorgio et al.   BIOINFORMATICS

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(2016) Carlos Alonso-Blanco et al.   CELL

Adaptive divergence in flowering time among natural populations ofArabidopsis thaliana: Estimates of selection and QTL mapping

(2016) Jon Ågren et al.   EVOLUTION

S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning

(2016) Daniel R. Schrider et al.   PLoS Genetics

Seed dormancy cycling and mortality differ between two locally adapted populations ofArabidopsis thaliana

(2015) Froukje M. Postma et al.   ANNALS OF BOTANY

DOG1-imposed dormancy mediates germination responses to temperature cues

(2015) Michael Murphey et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Maternal environment affects the genetic basis of seed dormancy inArabidopsis thaliana

(2015) Froukje M. Postma et al.   MOLECULAR ECOLOGY

Natural variation in the C-repeat binding factor cold response pathway correlates with local adaptation of Arabidopsis ecotypes

(2015) Malia A. Gehan et al.   PLANT JOURNAL

Keeping It Local: Evidence for Positive Selection in Swedish Arabidopsis thaliana

(2014) Christian D. Huber et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural Variation in Abiotic Stress Responsive Gene Expression and Local Adaptation to Climate in Arabidopsis thaliana

(2014) Jesse R. Lasky et al.   MOLECULAR BIOLOGY AND EVOLUTION

QTL mapping of freezing tolerance: links to fitness and adaptive trade-offs

(2014) Christopher G. Oakley et al.   MOLECULAR ECOLOGY

Lagging adaptation to warming climate in Arabidopsis thaliana

(2014) A. M. Wilczek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment

(2013) David L. Des Marais et al.   Annual Review of Ecology Evolution and Systematics

Soil seed bank and among-years genetic diversity in arid populations of Eruca sativa Miller (Brassicaceae)

(2013) N. Hanin et al.   JOURNAL OF ARID ENVIRONMENTS

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

(2013) Quan Long et al.   NATURE GENETICS

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

ARABIDOPSIS THALIANA HOMEOBOX25 Uncovers a Role for Gibberellins in Seed Longevity

(2013) E. Bueso et al.   PLANT PHYSIOLOGY

Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana

(2013) J. Agren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

Genetic trade-offs and conditional neutrality contribute to local adaptation

(2012) JILL T. ANDERSON et al.   MOLECULAR ECOLOGY

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range

(2012) Jon Ågren et al.   NEW PHYTOLOGIST

Physiological Genomics of Response to Soil Drying in Diverse Arabidopsis Accessions

(2012) D. L. Des Marais et al.   PLANT CELL

Natural Variation for Seed Longevity and Seed Dormancy Are Negatively Correlated in Arabidopsis

(2012) T.-P. Nguyen et al.   PLANT PHYSIOLOGY

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

A Map of Local Adaptation in Arabidopsis thaliana

(2011) A. Fournier-Level et al.   SCIENCE

The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy

(2010) XUEQING HUANG et al.   MOLECULAR ECOLOGY

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

(2009) Joe Hereford   AMERICAN NATURALIST

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

The Arabidopsis A4 Subfamily of Lectin Receptor Kinases Negatively Regulates Abscisic Acid Response in Seed Germination

(2008) Z. Xin et al.   PLANT PHYSIOLOGY

Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes

(2007) Pawel Michalak   GENOMICS