Role of a single noncoding nucleotide in the evolution of an epidemic African clade ofSalmonella

Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa

(2017) Philip M. Ashton et al.   Genome Medicine

Characterization of the Prophage Repertoire of African Salmonella Typhimurium ST313 Reveals High Levels of Spontaneous Induction of Novel Phage BTP1

(2017) Siân V. Owen et al.   Frontiers in Microbiology

The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium

(2016) Aoife M. Colgan et al.   PLoS Genetics

Ceftriaxone-Resistant Salmonella enterica Serotype Typhimurium Sequence Type 313 from Kenyan Patients Is Associated with theblaCTX-M-15Gene on a Novel IncHI2 Plasmid

(2015) Samuel Kariuki et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago

(2015) Simon Rasmussen et al.   CELL

A BTP1 prophage gene present in invasive non-typhoidalSalmonelladetermines composition and length of the O-antigen of the lipopolysaccharide

(2015) Erica Kintz et al.   MOLECULAR MICROBIOLOGY

A single natural nucleotide mutation alters bacterial pathogen host tropism

(2015) David Viana et al.   NATURE GENETICS

Early emergence of Yersinia pestis as a severe respiratory pathogen

(2015) Daniel L. Zimbler et al.   Nature Communications

Invasive Salmonella Typhimurium ST313 with Naturally Attenuated Flagellin Elicits Reduced Inflammation and Replicates within Macrophages

(2015) Girish Ramachandran et al.   PLoS Neglected Tropical Diseases

RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

(2015) Shabarinath Srikumar et al.   PLoS Pathogens

The outer membrane protease PgtE of Salmonella enterica interferes with the alternative complement pathway by cleaving factors B and H

(2015) Rauna Riva et al.   Frontiers in Microbiology

Non-typhoidal Salmonella Typhimurium ST313 isolates that cause bacteremia in humans stimulate less inflammasome activation than ST19 isolates associated with gastroenteritis

(2015) Sarah Carden et al.   Pathogens and Disease

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

(2014) David Coil et al.   BIOINFORMATICS

Increased severity of respiratory infections associated with elevated anti-LPS IgG2 which inhibits serum bactericidal killing

(2014) Timothy J. Wells et al.   JOURNAL OF EXPERIMENTAL MEDICINE

The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313

(2014) Ana Herrero-Fresno et al.   PLoS One

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

Salmonella enterica Serovar Typhimurium Skills To Succeed in the Host: Virulence and Regulation

(2013) A. Fabrega et al.   CLINICAL MICROBIOLOGY REVIEWS

Differential timing of antibody-mediated phagocytosis and cell-free killing of invasive AfricanSalmonellaallows immune evasion

(2013) Matthew K. Siggins et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

(2013) S. K. Sheppard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A model based criterion for gene expression calls using RNA-seq data

(2013) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Invasive Non-Typhoidal Salmonella Typhimurium ST313 Are Not Host-Restricted and Have an Invasive Phenotype in Experimentally Infected Chickens

(2013) Bryony N. Parsons et al.   PLoS Neglected Tropical Diseases

Invasive African nontyphoidal Salmonella requires high levels of complement for cell-free antibody-dependent killing

(2012) Yun Shan Goh et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa

(2012) Nicholas A Feasey et al.   LANCET

Genomic analysis of a key innovation in an experimental Escherichia coli population

(2012) Zachary D. Blount et al.   NATURE

Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa

(2012) Chinyere K Okoro et al.   NATURE GENETICS

Genotypic Homogeneity of Multidrug Resistant S. Typhimurium Infecting Distinct Adult and Childhood Susceptibility Groups in Blantyre, Malawi

(2012) Chisomo L. Msefula et al.   PLoS One

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440

(2011) Esteban Martínez-García et al.   ENVIRONMENTAL MICROBIOLOGY

Salmonella Virchow isolates from human and avian origins in England - molecular characterization and infection of epithelial cells and poultry

(2011) A.-M. Salisbury et al.   JOURNAL OF APPLIED MICROBIOLOGY

Genome Sequences of Salmonella enterica Serovar Typhimurium, Choleraesuis, Dublin, and Gallinarum Strains of Well- Defined Virulence in Food-Producing Animals

(2011) E. J. Richardson et al.   JOURNAL OF BACTERIOLOGY

Absent Bactericidal Activity of Mouse Serum against Invasive African Nontyphoidal Salmonella Results from Impaired Complement Function but Not a Lack of Antibody

(2011) M. K. Siggins et al.   JOURNAL OF IMMUNOLOGY

Probing Cellular Processes with Oligo-Mediated Recombination and Using the Knowledge Gained to Optimize Recombineering

(2011) James A. Sawitzke et al.   JOURNAL OF MOLECULAR BIOLOGY

Activation of cryptic aminoglycoside resistance in Salmonella enterica

(2011) Sanna Koskiniemi et al.   MOLECULAR MICROBIOLOGY

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

(2010) Chad Laing et al.   BMC BIOINFORMATICS

Thrombin-activatable fibrinolysis inhibitor is degraded by Salmonella enterica and Yersinia pestis

(2010) M. VALLS SERÓN et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Importance of antibody and complement for oxidative burst and killing of invasive nontyphoidal Salmonella by blood cells in Africans

(2010) E. N. Gondwe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

(2009) R. A. Kingsley et al.   GENOME RESEARCH

Invited review: Breaking barriers — attack on innate immune defences by omptin surface proteases of enterobacterial pathogens

(2009) Johanna Haiko et al.   Innate Immunity

Overexpression of the chromosomally encoded aminoglycoside acetyltransferase eis confers kanamycin resistance in Mycobacterium tuberculosis

(2009) M. A. Zaunbrecher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

Proteolytic inactivation of tissue factor pathway inhibitor by bacterial omptins

(2008) T. H. Yun et al.   BLOOD

Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

(2008) N. R. Thomson et al.   GENOME RESEARCH

Modulation of the Regulatory Activity of Bacterial Two-component Systems by SlyA

(2008) Haowei Song et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The neglected role of antibody in protection against bacteremia caused by nontyphoidal strains of Salmonella in African children

(2008) Calman A. MacLennan et al.   JOURNAL OF CLINICAL INVESTIGATION

Activation of pro-matrix metalloproteinase-9 and degradation of gelatin by the surface protease PgtE of Salmonella enterica serovar Typhimurium

(2007) Päivi Ramu et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY