Variable selection in omics data: A practical evaluation of small sample sizes

Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster

(2016) Yanzhu Lin et al.   BMC GENOMICS

Least absolute shrinkage and selection operator type methods for the identification of serum biomarkers of overweight and obesity: simulation and application

(2016) Monica M. Vasquez et al.   BMC Medical Research Methodology

The use of random-effect models for high-dimensional variable selection problems

(2016) Sunghoon Kwon et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Toward the integration ofOmicsdata in epidemiological studies: still a “long and winding road”

(2016) Evangelina López de Maturana et al.   GENETIC EPIDEMIOLOGY

Chemometric technique performances in predicting forest soil chemical and biological properties from UV-Vis-NIR reflectance spectra with small, high dimensional datasets

(2016) A Bellino et al.   iForest-Biogeosciences and Forestry

r2VIM: A new variable selection method for random forests in genome-wide association studies

(2016) Silke Szymczak et al.   BioData Mining

A tutorial review: Metabolomics and partial least squares-discriminant analysis – a marriage of convenience or a shotgun wedding

(2015) Piotr S. Gromski et al.   ANALYTICA CHIMICA ACTA

Comparison of subset selection methods in linear regression in the context of health-related quality of life and substance abuse in Russia

(2015) Olga Morozova et al.   BMC Medical Research Methodology

An analysis of ozone damage to historical maize and soybean yields in the United States

(2015) Justin M. McGrath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Feature Selection with theBorutaPackage

(2015) Miron B. Kursa et al.   Journal of Statistical Software

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Next generation modeling in GWAS: comparing different genetic architectures

(2014) Evangelina López de Maturana et al.   HUMAN GENETICS

Partial least squares discriminant analysis: taking the magic away

(2014) Richard G. Brereton et al.   JOURNAL OF CHEMOMETRICS

Metabolite identification: are you sure? And how do your peers gauge your confidence?

(2014) Darren J. Creek et al.   Metabolomics

Simulation Studies as Designed Experiments: The Comparison of Penalized Regression Models in the “Large p, Small n” Setting

(2014) Elias Chaibub Neto et al.   PLoS One

A comparative study of variable selection methods in the context of developing psychiatric screening instruments

(2013) Feihan Lu et al.   STATISTICS IN MEDICINE

Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics

(2012) Warwick B. Dunn et al.   Metabolomics

Translational biomarker discovery in clinical metabolomics: an introductory tutorial

(2012) Jianguo Xia et al.   Metabolomics

Metabolomics: the apogee of the omics trilogy

(2012) Gary J. Patti et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

(2011) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

Permutation importance: a corrected feature importance measure

(2010) André Altmann et al.   BIOINFORMATICS

High-dimensional classification using features annealed independence rules

(2009) Jianqing Fan et al.   ANNALS OF STATISTICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

Preprocessing, classification modeling and feature selection using flow injection electrospray mass spectrometry metabolite fingerprint data

(2008) David P Enot et al.   Nature Protocols

Cross-validation and bootstrapping are unreliable in small sample classification

(2008) A. Isaksson et al.   PATTERN RECOGNITION LETTERS