A novel optogenetically tunable frequency modulating oscillator

A population‐based temporal logic gate for timing and recording chemical events

(2016) Victoria Hsiao et al.   Molecular Systems Biology

Synchronous long-term oscillations in a synthetic gene circuit

(2016) Laurent Potvin-Trottier et al.   NATURE

Repurposing Synechocystis PCC6803 UirS–UirR as a UV-Violet/Green Photoreversible Transcriptional Regulatory Tool in E. coli

(2016) Prabha Ramakrishnan et al.   ACS Synthetic Biology

Optogenetics: 10 years of microbial opsins in neuroscience

(2015) Karl Deisseroth   NATURE NEUROSCIENCE

Detection of pathological biomarkers in human clinical samples via amplifying genetic switches and logic gates

(2015) Alexis Courbet et al.   Science Translational Medicine

Optogenetic characterization methods overcome key challenges in synthetic and systems biology

(2014) Evan J Olson et al.   Nature Chemical Biology

Engineering genetic circuits that compute and remember

(2014) Piro Siuti et al.   Nature Protocols

Chaos and Robustness in a Single Family of Genetic Oscillatory Networks

(2014) Daniel Fu et al.   PLoS One

Using Optogenetics to Interrogate the Dynamic Control of Signal Transmission by the Ras/Erk Module

(2013) Jared E. Toettcher et al.   CELL

Genomic mining of prokaryotic repressors for orthogonal logic gates

(2013) Brynne C Stanton et al.   Nature Chemical Biology

Biological Signal Processing with a Genetic Toggle Switch

(2013) Patrick Hillenbrand et al.   PLoS One

The Goodwin Model: Behind the Hill Function

(2013) Didier Gonze et al.   PLoS One

Amplifying Genetic Logic Gates

(2013) J. Bonnet et al.   SCIENCE

Optogenetic control of cell function using engineered photoreceptors

(2012) Gopal P. Pathak et al.   BIOLOGY OF THE CELL

A reconfigurable NAND/NOR genetic logic gate

(2012) Angel Goñi-Moreno et al.   BMC Systems Biology

Genetic programs constructed from layered logic gates in single cells

(2012) Tae Seok Moon et al.   NATURE

Long-term model predictive control of gene expression at the population and single-cell levels

(2012) J. Uhlendorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering the robustness of industrial microbes through synthetic biology

(2012) Linjiang Zhu et al.   TRENDS IN MICROBIOLOGY

Customizing cell signaling using engineered genetic logic circuits

(2012) Baojun Wang et al.   TRENDS IN MICROBIOLOGY

Synthesizing Biomolecule-Based Boolean Logic Gates

(2012) Takafumi Miyamoto et al.   ACS Synthetic Biology

The use of light for engineered control and reprogramming of cellular functions

(2011) William Bacchus et al.   CURRENT OPINION IN BIOTECHNOLOGY

Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression

(2011) L. T. MacNeil et al.   GENOME RESEARCH

A sensing array of radically coupled genetic ‘biopixels’

(2011) Arthur Prindle et al.   NATURE

In silico feedback for in vivo regulation of a gene expression circuit

(2011) Andreas Milias-Argeitis et al.   NATURE BIOTECHNOLOGY

Light-based feedback for controlling intracellular signaling dynamics

(2011) Jared E Toettcher et al.   NATURE METHODS

Dynamics of coupled repressilators: The role of mRNA kinetics and transcription cooperativity

(2011) I. Potapov et al.   PHYSICAL REVIEW E

Multi-Input RNAi-Based Logic Circuit for Identification of Specific Cancer Cells

(2011) Z. Xie et al.   SCIENCE

Engineering modular and orthogonal genetic logic gates for robust digital-like synthetic biology

(2011) Baojun Wang et al.   Nature Communications

Making Cellular Memories

(2010) Devin R. Burrill et al.   CELL

Multichromatic Control of Gene Expression in Escherichia coli

(2010) Jeffrey J. Tabor et al.   JOURNAL OF MOLECULAR BIOLOGY

A comparative analysis of synthetic genetic oscillators

(2010) O. Purcell et al.   Journal of the Royal Society Interface

Five hard truths for synthetic biology

(2010) Roberta Kwok   NATURE

A synchronized quorum of genetic clocks

(2010) Tal Danino et al.   NATURE

Rationally designed logic integration of regulatory signals in mammalian cells

(2010) Madeleine Leisner et al.   Nature Nanotechnology

Robust synthetic biology design: stochastic game theory approach

(2009) Bor-Sen Chen et al.   BIOINFORMATICS

Modeling stochasticity and robustness in gene regulatory networks

(2009) A. Garg et al.   BIOINFORMATICS

Characterization and merger of oscillatory mechanisms in an artificial genetic regulatory network

(2009) D. Yang et al.   CHAOS

A tunable synthetic mammalian oscillator

(2009) Marcel Tigges et al.   NATURE

Tuning the Strength of a Bacterial N-end Rule Degradation Signal

(2008) Kevin H. Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A fast, robust and tunable synthetic gene oscillator

(2008) Jesse Stricker et al.   NATURE

Modelling and analysis of gene regulatory networks

(2008) Guy Karlebach et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Biofuel alternatives to ethanol: pumping the microbial well

(2008) J.L. Fortman et al.   TRENDS IN BIOTECHNOLOGY