De Novo characterization of transcriptomes from two North American Papaipema stem-borers (Lepidoptera: Noctuidae)
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
De Novo characterization of transcriptomes from two North American Papaipema stem-borers (Lepidoptera: Noctuidae)
Authors
Keywords
Transcriptome analysis, Protein domains, Sequence databases, Moths and butterflies, Invertebrate genomics, Retrotransposons, Gene prediction, Database searching
Journal
PLoS One
Volume 13, Issue 1, Pages e0191061
Publisher
Public Library of Science (PLoS)
Online
2018-01-25
DOI
10.1371/journal.pone.0191061
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genome-Wide Estimates of Transposable Element Insertion and Deletion Rates in Drosophila Melanogaster
- (2017) Jeffrey R. Adrion et al. Genome Biology and Evolution
- CTRL+INSERT: retrotransposons and their contribution to regulation and innovation of the transcriptome
- (2016) Jonathan Göke et al. EMBO REPORTS
- TransRate: reference-free quality assessment of de novo transcriptome assemblies
- (2016) Richard Smith-Unna et al. GENOME RESEARCH
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- Open questions in the study of de novo genes: what, how and why
- (2016) Aoife McLysaght et al. NATURE REVIEWS GENETICS
- Resistance evolution inDrosophila: the case ofCYP6G1
- (2016) Gaelle Le Goff et al. PEST MANAGEMENT SCIENCE
- Proteomics comparison of aspartic protease enzyme in insects
- (2016) Samin SEDDIGH et al. TURKISH JOURNAL OF BIOLOGY
- Moving through the Stressed Genome: Emerging Regulatory Roles for Transposons in Plant Stress Response
- (2016) Pooja Negi et al. Frontiers in Plant Science
- Restricting retrotransposons: a review
- (2016) John L. Goodier Mobile DNA
- Removal of redundant contigs from de novo RNA-Seq assemblies via homology search improves accurate detection of differentially expressed genes
- (2015) Hanako Ono et al. BMC GENOMICS
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Genes from scratch – the evolutionary fate of de novo genes
- (2015) Christian Schlötterer TRENDS IN GENETICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
- (2014) Evgenia V. Kriventseva et al. NUCLEIC ACIDS RESEARCH
- Fossilized Nuclei and Chromosomes Reveal 180 Million Years of Genomic Stasis in Royal Ferns
- (2014) B. Bomfleur et al. SCIENCE
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Mechanisms and Dynamics of Orphan Gene Emergence in Insect Genomes
- (2013) Lothar Wissler et al. Genome Biology and Evolution
- Identification and Partial Characterization of Midgut Proteases in the Lesser Mulberry Pyralid,Glyphodes pyloalis
- (2013) Atiyeh Mahdavi et al. JOURNAL OF INSECT SCIENCE
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- FFPred 2.0: Improved Homology-Independent Prediction of Gene Ontology Terms for Eukaryotic Protein Sequences
- (2013) Federico Minneci et al. PLoS One
- De Novo ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences
- (2013) Josephine A. Reinhardt et al. PLoS Genetics
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- How important are transposons for plant evolution?
- (2012) Damon Lisch NATURE REVIEWS GENETICS
- Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress
- (2012) Géraldine Servant et al. NUCLEIC ACIDS RESEARCH
- Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana
- (2011) Mark TA Donoghue et al. BMC EVOLUTIONARY BIOLOGY
- Parasitism of Lepidopterous Stem Borers in Cultivated and Natural Habitats
- (2011) Duna Madu Mailafiya et al. JOURNAL OF INSECT SCIENCE
- The evolutionary origin of orphan genes
- (2011) Diethard Tautz et al. NATURE REVIEWS GENETICS
- Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies
- (2011) H. James Tripp et al. NUCLEIC ACIDS RESEARCH
- Origins, evolution, and phenotypic impact of new genes
- (2010) H. Kaessmann GENOME RESEARCH
- New Genes in Drosophila Quickly Become Essential
- (2010) S. Chen et al. SCIENCE
- LARGE-SCALE EVOLUTIONARY PATTERNS OF HOST PLANT ASSOCIATIONS IN THE LEPIDOPTERA
- (2009) Steph B. J. Menken et al. EVOLUTION
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
- (2009) J. D. Hollister et al. GENOME RESEARCH
- The NCBI BioSystems database
- (2009) Lewis Y. Geer et al. NUCLEIC ACIDS RESEARCH
- More than just orphans: are taxonomically-restricted genes important in evolution?
- (2009) Konstantin Khalturin et al. TRENDS IN GENETICS
- The diversity of retrotransposons and the properties of their reverse transcriptases
- (2008) Thomas H. Eickbush et al. VIRUS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More