FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer

ONGene: A literature-based database for human oncogenes

(2017) Yining Liu et al.   Journal of Genetics and Genomics

Integrated genomic characterization of oesophageal carcinoma

(2017)   NATURE

Genomic analyses identify molecular subtypes of pancreatic cancer

(2016) Peter Bailey et al.   NATURE

Discovering and understanding oncogenic gene fusions through data intensive computational approaches

(2016) Natasha S. Latysheva et al.   NUCLEIC ACIDS RESEARCH

Recurrent chimeric fusion RNAs in non-cancer tissues and cells

(2016) Mihaela Babiceanu et al.   NUCLEIC ACIDS RESEARCH

COSMIC: somatic cancer genetics at high-resolution

(2016) Simon A. Forbes et al.   NUCLEIC ACIDS RESEARCH

Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers

(2016) Babak Alaei-Mahabadi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A semi–supervised tensor regression model for siRNA efficacy prediction

(2015) Bui Ngoc Thang et al.   BMC BIOINFORMATICS

Integrative Clinical Genomics of Advanced Prostate Cancer

(2015) Dan Robinson et al.   CELL

Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data

(2015) Silvia Liu et al.   NUCLEIC ACIDS RESEARCH

Enhancing potency of siRNA targeting fusion genes by optimization outside of target sequence

(2015) Kseniya Gavrilov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FARE-CAFE: a database of functional and regulatory elements of cancer-associated fusion events

(2015) Praveen Kumar Korla et al.   Database-The Journal of Biological Databases and Curation

Landscape of gene fusions in epithelial cancers: seq and ye shall find

(2015) Chandan Kumar-Sinha et al.   Genome Medicine

Novel Fusion Transcripts Associate with Progressive Prostate Cancer

(2014) Yan P. Yu et al.   AMERICAN JOURNAL OF PATHOLOGY

RNA-seq of 272 gliomas revealed a novel, recurrentPTPRZ1-METfusion transcript in secondary glioblastomas

(2014) Zhao-Shi Bao et al.   GENOME RESEARCH

A comprehensive transcriptional portrait of human cancer cell lines

(2014) Christiaan Klijn et al.   NATURE BIOTECHNOLOGY

The landscape and therapeutic relevance of cancer-associated transcript fusions

(2014) K Yoshihara et al.   ONCOGENE

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

State-of-the-Art Fusion-Finder Algorithms Sensitivity and Specificity

(2013) Matteo Carrara et al.   Biomed Research International

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

(2012) Milana Frenkel-Morgenstern et al.   NUCLEIC ACIDS RESEARCH

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

(2011) Henrik Edgren et al.   GENOME BIOLOGY

Integrative analysis of the melanoma transcriptome

(2010) M. F. Berger et al.   GENOME RESEARCH

E-RNAi: a web application for the multi-species design of RNAi reagents—2010 update

(2010) Thomas Horn et al.   NUCLEIC ACIDS RESEARCH

Expression of Conjoined Genes: Another Mechanism for Gene Regulation in Eukaryotes

(2010) Tulika Prakash et al.   PLoS One

siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect

(2009) Yuki Naito et al.   BMC BIOINFORMATICS

Candidate Biomarkers of Response to an Experimental Cancer Drug Identified through a Large-scale RNA Interference Genetic Screen

(2009) J. Mullenders et al.   CLINICAL CANCER RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The impact of target site accessibility on the design of effective siRNAs

(2008) Hakim Tafer et al.   NATURE BIOTECHNOLOGY