ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

Novel domain combinations in proteins encoded by chimeric transcripts

(2012) Milana Frenkel-Morgenstern et al.   BIOINFORMATICS

Detection of Redundant Fusion Transcripts as Biomarkers or Disease-Specific Therapeutic Targets in Breast Cancer

(2012) Y. W. Asmann et al.   CANCER RESEARCH

Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts

(2012) M. Frenkel-Morgenstern et al.   GENOME RESEARCH

Selection pressure exerted by imatinib therapy leads to disparate outcomes of imatinib discontinuation trials

(2012) M. Tang et al.   HAEMATOLOGICA

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

(2012) Sarah Djebali et al.   PLoS One

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data

(2012) Mark F Rogers et al.   GENOME BIOLOGY

Gene fusions and RNA trans-splicing in normal and neoplastic human cells

(2011) Hui Li et al.   CELL CYCLE

Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia

(2011) Xose S. Puente et al.   NATURE

Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia

(2011) Víctor Quesada et al.   NATURE GENETICS

GenBank

(2011) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

The UCSC Genome Browser database: extensions and updates 2011

(2011) T. R. Dreszer et al.   NUCLEIC ACIDS RESEARCH

Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing

(2011) K. Kannan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

(2011) Henrik Edgren et al.   GENOME BIOLOGY

Uncovering the Complexity of Transcriptomes with RNA-Seq

(2010) Valerio Costa et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Understanding the pathogenesis of Alzheimer’s disease: will RNA-Seq realize the promise of transcriptomics?

(2010) Greg T. Sutherland et al.   JOURNAL OF NEUROCHEMISTRY

An introduction to genes, genomes and disease

(2010) Peter A Hall et al.   JOURNAL OF PATHOLOGY

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

dbCRID: a database of chromosomal rearrangements in human diseases

(2010) F. Kong et al.   NUCLEIC ACIDS RESEARCH

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

(2010) S. A. Forbes et al.   NUCLEIC ACIDS RESEARCH

Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro

(2010) Jonathan Houseley et al.   PLoS One

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing

(2009) Alessandro Guffanti et al.   BMC GENOMICS

Detection of human interchromosomal trans-splicing in sequence databanks

(2009) R. H. Herai et al.   BRIEFINGS IN BIOINFORMATICS

Transcriptome sequencing to detect gene fusions in cancer

(2009) Christopher A. Maher et al.   NATURE

Implications of chimaeric non-co-linear transcripts

(2009) Thomas R. Gingeras   NATURE

An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer

(2009) Xiao-Song Wang et al.   NATURE BIOTECHNOLOGY

ChimerDB 2.0—a knowledgebase for fusion genes updated

(2009) Pora Kim et al.   NUCLEIC ACIDS RESEARCH

Signatures of Selection in Fusion Transcripts Resulting From Chromosomal Translocations in Human Cancer

(2009) Iñigo Ortiz de Mendíbil et al.   PLoS One

Chimeric transcript discovery by paired-end transcriptome sequencing

(2009) C. A. Maher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Novel Isoforms of the EML4-ALK Transforming Gene in Non-Small Cell Lung Cancer

(2008) Y. L. Choi et al.   CANCER RESEARCH

Short Homologous Sequences Are Strongly Associated with the Generation of Chimeric RNAs in Eukaryotes

(2008) Xin Li et al.   JOURNAL OF MOLECULAR EVOLUTION

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

(2008) Peter J Campbell et al.   NATURE GENETICS

Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells

(2008) G. Di Segni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Neoplastic Gene Fusion Mimics Trans-Splicing of RNAs in Normal Human Cells

(2008) H. Li et al.   SCIENCE