Transcriptome analysis of Cd-treated switchgrass root revealed novel transcripts and the importance of HSF/HSP network in switchgrass Cd tolerance

HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants

(2017) Shu-Yu Cai et al.   JOURNAL OF PINEAL RESEARCH

Shedding light on NO homeostasis: Light as a key regulator of glutathione and nitric oxide metabolisms during seedling deetiolation

(2017) Rafael Zuccarelli et al.   NITRIC OXIDE-BIOLOGY AND CHEMISTRY

Cadmium minimization in wheat: A critical review

(2016) Muhammad Rizwan et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Cadmium stress in rice: toxic effects, tolerance mechanisms, and management: a critical review

(2016) Muhammad Rizwan et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Morph-physiological responses of two switchgrass (Panicum virgatumL.) cultivars to cadmium stress

(2016) Changhao Liu et al.   GRASSLAND SCIENCE

NADPH oxidases differentially regulate ROS metabolism and nutrient uptake under cadmium toxicity

(2016) D. K. Gupta et al.   PLANT CELL AND ENVIRONMENT

Morph-physiological responses of two switchgrass (Panicum virgatumL.) cultivars to cadmium stress

(2016) Changhao Liu et al.   GRASSLAND SCIENCE

The ER stress regulator Bip mediates cadmium-induced autophagy and neuronal senescence

(2016) Tao Wang et al.   Scientific Reports

LcBiP, a endoplasmic reticulum chaperone binding protein gene fromLycium chinense, confers cadmium tolerance in transgenic tobacco

(2015) Chunfeng Guan et al.   BIOTECHNOLOGY PROGRESS

Model optimization of cadmium and accumulation in switchgrass (Panicum virgatum L.): potential use for ecological phytoremediation in Cd-contaminated soils

(2015) Quanzhen Wang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

HMMER web server: 2015 update

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Cadmium impairs iron homeostasis in Arabidopsis thaliana by increasing the polysaccharide contents and the iron-binding capacity of root cell walls

(2015) Shan Shan Xu et al.   PLANT AND SOIL

Multi-Level Interactions Between Heat Shock Factors, Heat Shock Proteins, and the Redox System Regulate Acclimation to Heat

(2015) Nicky Driedonks et al.   Frontiers in Plant Science

Evaluation of Candidate Reference Genes for Normalization of Quantitative RT-PCR in Switchgrass Under Various Abiotic Stress Conditions

(2014) Linkai Huang et al.   BioEnergy Research

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Cadmium minimization in rice. A review

(2013) Abin Sebastian et al.   Agronomy for Sustainable Development

The ER luminal binding protein (BiP) alleviates Cd2+-induced programmed cell death through endoplasmic reticulum stress–cell death signaling pathway in tobacco cells

(2013) Hua Xu et al.   JOURNAL OF PLANT PHYSIOLOGY

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Leachability of cadmium, lead, and zinc in a long-term spontaneously revegetated slag heap: implications for phytostabilization

(2012) David Houben et al.   JOURNAL OF SOILS AND SEDIMENTS

A general method for high-quality RNA isolation from metabolite-rich fruits

(2012) O. Gudenschwager et al.   SOUTH AFRICAN JOURNAL OF BOTANY

Metal Selectivity Determinants in a Family of Transition Metal Transporters

(2011) Dorina Podar et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Selection and characterization of a new switchgrass (Panicum virgatum L.) line with high somatic embryogenic capacity for genetic transformation

(2011) Bin Xu et al.   SCIENTIA HORTICULTURAE

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

The endoplasmic reticulum-associated degradation is necessary for plant salt tolerance

(2010) Lijing Liu et al.   CELL RESEARCH

Root responses to cadmium in the rhizosphere: a review

(2010) A. Lux et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Orthologs of the Class A4 Heat Shock Transcription Factor HsfA4a Confer Cadmium Tolerance in Wheat and Rice

(2009) D. Shim et al.   PLANT CELL

Current status of cadmium as an environmental health problem

(2009) Lars Järup et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Molecular Basis for Regulation of the Heat Shock Transcription Factor σ32 by the DnaK and DnaJ Chaperones

(2008) Fernanda Rodriguez et al.   MOLECULAR CELL