QTL sequencing strategy to map genomic regions associated with resistance to ascochyta blight in chickpea

QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.)

(2017) Manish K. Pandey et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic Analysis of NBS-LRR Gene Family in Chickpea and Their Expression Profiles in Response to Ascochyta Blight Infection

(2017) Mandeep S. Sagi et al.   Frontiers in Plant Science

Identification, Mapping, and Molecular Marker Development for Rgsr8.1: A New Quantitative Trait Locus Conferring Resistance to Gibberella Stalk Rot in Maize (Zea mays L.)

(2017) Qian Chen et al.   Frontiers in Plant Science

Genotyping-by-sequencing reveals three QTL for clubroot resistance to six pathotypes of Plasmodiophora brassicae in Brassica rapa

(2017) Fengqun Yu et al.   Scientific Reports

QTL mapping of early flowering and resistance to ascochyta blight in chickpea

(2016) Ketema Daba et al.   GENOME

QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea

(2016) Vikas K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

An Update on Genetic Resistance of Chickpea to Ascochyta Blight

(2016) Mamta Sharma et al.   Agronomy-Basel

Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq

(2015) Eudald Illa-Berenguer et al.   THEORETICAL AND APPLIED GENETICS

Cytosolic glutamine synthetase is important for photosynthetic efficiency and water use efficiency in potato as revealed by high-throughput sequencing QTL analysis

(2015) Kacper Piotr Kaminski et al.   THEORETICAL AND APPLIED GENETICS

An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.)

(2015) Sabiha Parween et al.   Scientific Reports

A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea

(2015) Deepak Bajaj et al.   Scientific Reports

Target Enrichment Improves Mapping of Complex Traits by Deep Sequencing

(2015) Jianjun Guo et al.   G3-Genes Genomes Genetics

Investigating the Association between Flowering Time and Defense in the Arabidopsis thaliana-Fusarium oxysporum Interaction

(2015) Rebecca Lyons et al.   PLoS One

Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly

(2014) Amit A Deokar et al.   BMC GENOMICS

Genetic and physical mapping of the QTLAR3 controlling blight resistance in chickpea (Cicer arietinum L)

(2014) E. Madrid et al.   EUPHYTICA

A chromosomal genomics approach to assess and validate thedesiandkabulidraft chickpea genome assemblies

(2014) Pradeep Ruperao et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic characterization of the acetohydroxyacid synthase (AHAS) gene responsible for resistance to imidazolinone in chickpea (Cicer arietinum L.)

(2014) Courtney Thompson et al.   THEORETICAL AND APPLIED GENETICS

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.)

(2013) Murali Mohan Sabbavarapu et al.   EUPHYTICA

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

Mapping of Quantitative Trait Loci Underlying Cold Tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes

(2013) Zemao Yang et al.   PLoS One

Allele-specific amplification for the detection of ascochyta blight resistance in chickpea

(2012) E. Madrid et al.   EUPHYTICA

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Characterization and genetic analysis of an EIN4-like sequence (CaETR-1) located in QTLAR1 implicated in ascochyta blight resistance in chickpea

(2012) E. Madrid et al.   PLANT CELL REPORTS

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)

(2012) Sanzhen Liu et al.   PLoS One

Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats

(2011) Jason D Gillman et al.   BMC PLANT BIOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

(2011) Paul M. Magwene et al.   PLoS Computational Biology

Effect of growth stages of chickpea on the genetic resistance of Ascochyta blight

(2010) Mamta Sharma et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Mapping a major gene for growth habit and QTLs for ascochyta blight resistance and flowering time in a population between chickpea and Cicer reticulatum

(2009) N. Aryamanesh et al.   EUPHYTICA

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Management of ascochyta blight in chickpeas in Australia

(2008) T. W. Bretag et al.   AUSTRALASIAN PLANT PATHOLOGY

The effect of spray quality on ascochyta blight control in chickpea

(2007) C. Armstrong-Cho et al.   CROP PROTECTION