Fractal Folding and Medium Viscoelasticity Contribute Jointly to Chromosome Dynamics

Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains

(2016) Guido Tiana et al.   BIOPHYSICAL JOURNAL

Physical Modeling of Dynamic Coupling between Chromosomal Loci

(2016) Thomas J. Lampo et al.   BIOPHYSICAL JOURNAL

The 3D Genome as Moderator of Chromosomal Communication

(2016) Job Dekker et al.   CELL

Self-Similar Conformations and Dynamics in Entangled Melts and Solutions of Nonconcatenated Ring Polymers

(2016) Ting Ge et al.   MACROMOLECULES

Exploring chromatin organization mechanisms through its dynamic properties

(2016) Irena Bronshtein et al.   Nucleus

Exploring chromatin organization mechanisms through its dynamic properties

(2016) Irena Bronshtein et al.   Nucleus

Physical Modeling of Chromosome Segregation in Escherichia coli Reveals Impact of Force and DNA Relaxation

(2015) Thomas J. Lampo et al.   BIOPHYSICAL JOURNAL

Principles of chromatin organization in yeast: relevance of polymer models to describe nuclear organization and dynamics

(2015) Renjie Wang et al.   CURRENT OPINION IN CELL BIOLOGY

The role of loops on the order of eukaryotes and prokaryotes

(2015) Andreas Hofmann et al.   FEBS LETTERS

Modeling chromosomes: Beyond pretty pictures

(2015) Maxim V. Imakaev et al.   FEBS LETTERS

From structure to function of bacterial chromosomes: Evolutionary perspectives and ideas for new experiments

(2015) Marco Cosentino Lagomarsino et al.   FEBS LETTERS

Understanding the dynamics of rings in the melt in terms of the annealed tree model

(2015) Jan Smrek et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Forces, fluctuations, and self-organization in the nucleus

(2015) Thoru Pederson et al.   MOLECULAR BIOLOGY OF THE CELL

Dynamics of a polymer in an active and viscoelastic bath

(2015) Hans Vandebroek et al.   PHYSICAL REVIEW E

Anomalous Diffusion in Fractal Globules

(2015) M. V. Tamm et al.   PHYSICAL REVIEW LETTERS

Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid

(2015) Vittore F. Scolari et al.   Soft Matter

Analysis of Single Locus Trajectories for Extracting In Vivo Chromatin Tethering Interactions

(2015) Assaf Amitai et al.   PLoS Computational Biology

Chromatin Hydrodynamics

(2014) Robijn Bruinsma et al.   BIOPHYSICAL JOURNAL

3D Trajectories Adopted by Coding and Regulatory DNA Elements: First-Passage Times for Genomic Interactions

(2014) Joseph S. Lucas et al.   CELL

Models of chromosome structure

(2014) Mario Nicodemi et al.   CURRENT OPINION IN CELL BIOLOGY

The bacterial nucleoid: nature, dynamics and sister segregation

(2014) Nancy Kleckner et al.   CURRENT OPINION IN MICROBIOLOGY

Correlations of three-dimensional motion of chromosomal loci in yeast revealed by the double-helix point spread function microscope

(2014) Mikael P. Backlund et al.   MOLECULAR BIOLOGY OF THE CELL

From a melt of rings to chromosome territories: the role of topological constraints in genome folding

(2014) Jonathan D Halverson et al.   REPORTS ON PROGRESS IN PHYSICS

Persistent super-diffusive motion of Escherichia coli chromosomal loci

(2014) Avelino Javer et al.   Nature Communications

High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome

(2013) Houssam Hajjoul et al.   GENOME RESEARCH

Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes

(2013) Fabrizio Benedetti et al.   NUCLEIC ACIDS RESEARCH

Polymer model with long-range interactions: Analysis and applications to the chromatin structure

(2013) A. Amitai et al.   PHYSICAL REVIEW E

Micron-scale coherence in interphase chromatin dynamics

(2013) A. Zidovska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization

(2013) Avelino Javer et al.   Nature Communications

Universal Algorithm for Identification of Fractional Brownian Motion. A Case of Telomere Subdiffusion

(2012) Krzysztof Burnecki et al.   BIOPHYSICAL JOURNAL

Quantitative Analysis of Chromosome Condensation in Fission Yeast

(2012) B. Petrova et al.   MOLECULAR AND CELLULAR BIOLOGY

Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci

(2012) S. C. Weber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

(2012) Vincenzo G Benza et al.   REPORTS ON PROGRESS IN PHYSICS

The fractal globule as a model of chromatin architecture in the cell

(2011) Leonid A. Mirny   CHROMOSOME RESEARCH

Ergodicity convergence test suggests telomere motion obeys fractional dynamics

(2011) E. Kepten et al.   PHYSICAL REVIEW E

Subdiffusive motion of a polymer composed of subdiffusive monomers

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW E

Bacterial Chromosomal Loci Move Subdiffusively through a Viscoelastic Cytoplasm

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW LETTERS

Ergodic properties of fractional Brownian-Langevin motion

(2009) Weihua Deng et al.   PHYSICAL REVIEW E

Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells

(2009) I. Bronstein et al.   PHYSICAL REVIEW LETTERS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Structure and Dynamics of Interphase Chromosomes

(2008) Angelo Rosa et al.   PLoS Computational Biology