Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid

Nanoparticle Organization in Sandwiched Polymer Brushes

(2014) Tine Curk et al.   NANO LETTERS

From a melt of rings to chromosome territories: the role of topological constraints in genome folding

(2014) Jonathan D Halverson et al.   REPORTS ON PROGRESS IN PHYSICS

Fabrications and Applications of Stimulus-Responsive Polymer Films and Patterns on Surfaces: A Review

(2014) Jem-Kun Chen et al.   Materials

A model of the large-scale organization of chromatin

(2013) Mariano Barbieri et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Four-Dimensional Imaging of E. coli Nucleoid Organization and Dynamics in Living Cells

(2013) Jay K. Fisher et al.   CELL

Bacterial nucleoid structure probed by active drag and resistive pulse sensing

(2013) Vivek V. Thacker et al.   Integrative Biology

Polymer modeling of the E. coli genome reveals the involvement of locus positioning and macrodomain structuring for the control of chromosome conformation and segregation

(2013) Ivan Junier et al.   NUCLEIC ACIDS RESEARCH

Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes

(2013) Fabrizio Benedetti et al.   NUCLEIC ACIDS RESEARCH

Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription

(2013) Cedric Cagliero et al.   NUCLEIC ACIDS RESEARCH

Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization

(2013) C. A. Brackley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome

(2013) T. B. K. Le et al.   SCIENCE

Collective ordering of colloids in grafted polymer layers

(2013) Tine Curk et al.   Soft Matter

Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization

(2013) Avelino Javer et al.   Nature Communications

Polymer models of chromatin organization

(2013) Mariano Barbieri et al.   Frontiers in Genetics

Sister chromatid interactions in bacteria revealed by a site-specific recombination assay

(2012) Christian Lesterlin et al.   EMBO JOURNAL

Characterization of Escherichia coli nucleoids released by osmotic shock

(2012) Anna S. Wegner et al.   JOURNAL OF STRUCTURAL BIOLOGY

A model for the 3D chromatin architecture of pro and eukaryotes

(2012) Dieter W. Heermann et al.   METHODS

Variation of the folding and dynamics of theEscherichia colichromosome with growth conditions

(2012) Nastaran Hadizadeh Yazdi et al.   MOLECULAR MICROBIOLOGY

Physical manipulation of the Escherichia coli chromosome reveals its soft nature

(2012) J. Pelletier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complexity of chromatin folding is captured by the strings and binders switch model

(2012) M. Barbieri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

(2012) Vincenzo G Benza et al.   REPORTS ON PROGRESS IN PHYSICS

The fractal globule as a model of chromatin architecture in the cell

(2011) Leonid A. Mirny   CHROMOSOME RESEARCH

The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation

(2011) Mark A. Umbarger et al.   MOLECULAR CELL

A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation

(2011) Miriam Fritsche et al.   NUCLEIC ACIDS RESEARCH

Proteomic Analyses of Nucleoid-Associated Proteins in Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis, and Staphylococcus aureus

(2011) Ryosuke L. Ohniwa et al.   PLoS One

Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria

(2011) W. Wang et al.   SCIENCE

Chromosomal Macrodomains and Associated Proteins: Implications for DNA Organization and Replication in Gram Negative Bacteria

(2011) Remus T. Dame et al.   PLoS Genetics

DNA condensation in bacteria: Interplay between macromolecular crowding and nucleoid proteins

(2010) Renko de Vries   BIOCHIMIE

General organisational principles of the transcriptional regulation system: a tree or a circle?

(2010) Georgi Muskhelishvili et al.   Molecular BioSystems

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Bacterial Chromosomal Loci Move Subdiffusively through a Viscoelastic Cytoplasm

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW LETTERS

A Geometrical Model for DNA Organization in Bacteria

(2010) Mathias Buenemann et al.   PLoS One

Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament

(2010) P. A. Wiggins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization

(2010) Ivan Junier et al.   PLoS Computational Biology

Protein-Mediated Molecular Bridging: A Key Mechanism in Biopolymer Organization

(2009) Paul A. Wiggins et al.   BIOPHYSICAL JOURNAL

Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei

(2009) S. de Nooijer et al.   NUCLEIC ACIDS RESEARCH

All-or-none proteinlike folding transition of a flexible homopolymer chain

(2009) Mark P. Taylor et al.   PHYSICAL REVIEW E

The MatP/matS Site-Specific System Organizes the Terminus Region of the E. coli Chromosome into a Macrodomain

(2008) Romain Mercier et al.   CELL

DNA dynamics vary according to macrodomain topography in theE. colichromosome

(2008) Olivier Espeli et al.   MOLECULAR MICROBIOLOGY