4.5 Article

Heterozygote carriers for CNVs in PARK2 are at increased risk of Parkinson's disease

Journal

HUMAN MOLECULAR GENETICS
Volume 24, Issue 19, Pages 5637-5643

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/hmg/ddv277

Keywords

-

Funding

  1. European Community [PIAP-GA-2008-230596 MarkMD]

Ask authors/readers for more resources

Together with point mutations, homozygous deletions or duplications in PARK2 are responsible for the majority of autosomal recessive juvenile Parkinsonism. It is debated, however, whether heterozygous carriers of these mutations are at increased risk of Parkinson's disease (PD). Our goal was to determine whether heterozygous carriers of copy number variants (CNVs) affecting exons of the PARK2 gene are at risk of PD that is greater than that of non-carriers. We searched for CNVs affecting exons of PARK2 in a sample of 105 749 genotyped Icelanders. In total, 989 carriers, including 24 diagnosed with PD, were identified. The heterozygous carriers were tested for association in a sample of 1415 PD patients and 40 474 controls >= 65 years of age. PD patients were more often heterozygous carriers of PARK2 CNVs than controls [odds ratio (OR) = 1.69, P = 0.03] and compound heterozygous PD patients for a CNV and a missense mutation were not found. Furthermore, we conducted a meta-analysis of studies reporting on case-control samples screened for heterozygous PARK2 CNVs. Ten studies were included in the final analysis, with 4538 cases and 4213 controls. The pooled OR and P-value for the published and Icelandic results showed significant association between PARK2 CNVs and risk of PD (OR = 2.11, P = 2.54 x 10(-6)). Our analysis shows that heterozygous carriers of CNVs affecting exons of PARK2 have greater risk of PD than non-carriers.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.5
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Neurosciences

Reciprocal White Matter Changes Associated With Copy Number Variation at 15q11.2 BP1-BP2: A Diffusion Tensor Imaging Study

Ana Silva, Magnus O. Ulfarsson, Hreinn Stefansson, Omar Gustafsson, G. Bragi Walters, David E. J. Linden, Lawrence S. Wilkinson, Mark Drakesmith, Michael J. Owen, Jeremy Hall, Kari Stefansson

BIOLOGICAL PSYCHIATRY (2019)

Article Biochemistry & Molecular Biology

Somatic mutation that affects transcription factor binding upstream of CD55 in the temporal cortex of a late-onset Alzheimer disease patient

Hafdis Helgadottir, Par Lundin, Emelie Wallen Arzt, Anna-Karin Lindstrom, Caroline Graff, Maria Eriksson

HUMAN MOLECULAR GENETICS (2019)

Article Dermatology

Accumulation of Progerin Affects the Symmetry of Cell Division and Is Associated with Impaired Wnt Signaling and the Mislocalization of Nuclear Envelope Proteins

Agustin Sola-Carvajal, Gwladys Revechon, Hafdis T. Helgadottir, Daniel Whisenant, Robin Hagblom, Julia Dohla, Pekka Katajisto, David Brodin, Fredrik Fagerstrom-Billai, Nikenza Viceconte, Maria Eriksson

JOURNAL OF INVESTIGATIVE DERMATOLOGY (2019)

Article Multidisciplinary Sciences

Brain age prediction using deep learning uncovers associated sequence variants

B. A. Jonsson, G. Bjornsdottir, T. E. Thorgeirsson, L. M. Ellingsen, G. Bragi Walters, D. F. Gudbjartsson, H. Stefansson, K. Stefansson, M. O. Ulfarsson

NATURE COMMUNICATIONS (2019)

Article Oncology

Identification of known and novel familial cancer genes in Swedish colorectal cancer families

Hafdis T. Helgadottir, Jessada Thutkawkorapin, Anna Rohlin, Margareta Nordling, Kristina Lagerstedt-Robinson, Annika Lindblom

Summary: Identifying pathogenic variants remains challenging despite a strong history of CRC within families. Some rare high-risk mutations may cumulatively contribute to the occurrence of CRC in these families.

INTERNATIONAL JOURNAL OF CANCER (2021)

Editorial Material Neurosciences

Cognition in Schizophrenia

Hreinn Stefansson, Kari Stefansson

BIOLOGICAL PSYCHIATRY (2021)

Article Multidisciplinary Sciences

Sequencing for germline mutations in Swedish breast cancer families reveals novel breast cancer risk genes

Hafdis T. Helgadottir, Jessada Thutkawkorapin, Kristina Lagerstedt-Robinson, Annika Lindblom

Summary: Identifying pathogenic variants in individuals with a strong family history of breast cancer remains challenging, despite advancements in sequencing technology. Through exome sequencing, known pathogenic variants in BRIP1 and PALB2 genes were identified, along with 22 high-risk variants in novel breast cancer candidate genes. Further studies are needed to validate these findings and explore the potential roles of these genes in breast cancer susceptibility.

SCIENTIFIC REPORTS (2021)

Article Biochemistry & Molecular Biology

Colorectal cancer risk susceptibility loci in a Swedish population

Wen Liu, Hovsep Mahdessian, Hafdis Helgadottir, Xingwu Zhou, Jessada Thutkawkorapin, Xiang Jiao, Alicja Wolk, Annika Lindblom

Summary: Using haplotype analysis in Swedish CRC samples, novel risk loci were identified. The findings of loci on chromosomes 2q36.1 and 20q13.33 in the analysis of all samples were replicated in a second cohort. The study suggests that a risk locus may involve multiple genes, and haplotypes can offer insights into the genes possibly involved at specific loci.

MOLECULAR CARCINOGENESIS (2022)

Review Neurosciences

Neuroimaging Findings in Neurodevelopmental Copy Number Variants: Identifying Molecular Pathways to Convergent Phenotypes

Ana I. Silva, Friederike Ehrhart, Magnus O. Ulfarsson, Hreinn Stefansson, Kari Stefansson, Lawrence S. Wilkinson, Jeremy Hall, David E. J. Linden

Summary: Genomic copy number variants (CNVs) are associated with a high risk of neurodevelopmental disorders, and these high-risk genetic variants converge in common molecular pathways. Studies have shown that different CNVs have similar effects on core sensory, cognitive, and motor traits. Neuroimaging studies have provided valuable information on how CNVs affect brain structure and function. However, most studies only examine one CNV at a time, making it difficult to fully understand the extent of shared brain effects.

BIOLOGICAL PSYCHIATRY (2022)

Article Oncology

A Swedish Genome-Wide Haplotype Association Analysis Identifies a Novel Breast Cancer Susceptibility Locus in 8p21.2 and Characterizes Three Loci on Chromosomes 10, 11 and 16

Elin Barnekow, Wen Liu, Hafdis T. Helgadottir, Kyriaki Michailidou, Joe Dennis, Patrick Bryant, Jessada Thutkawkorapin, Camilla Wendt, Kamila Czene, Per Hall, Sara Margolin, Annika Lindblom

Summary: By analyzing combinations of chromosomal nearby variants, we identified a novel genetic breast cancer risk locus on chromosome 8 and confirmed three well known low risk loci.

CANCERS (2022)

Article Biochemistry & Molecular Biology

Whole-Exome Sequencing of Germline Variants in Non-BRCA Families with Hereditary Breast Cancer

Yaxuan Liu, Hafdis T. Helgadottir, Pedram Kharaziha, Jungmin Choi, Francesc Lopez-Giraldez, Shrikant M. Mane, Veronica Hoiom, Carl Christofer Juhlin, Catharina Larsson, Svetlana Bajalica-Lagercrantz

Summary: This study aimed to identify new predisposing genes for hereditary breast cancer (HBC) using whole-exome sequencing, but no pathogenic variants in known hereditary cancer-related genes were found. Further analysis suggested that a combination of low- and intermediate-genetic-risk variants might contribute to breast cancer susceptibility in these families.

BIOMEDICINES (2022)

Article Genetics & Heredity

Genome sequencing is a sensitive first-line test to diagnose individuals with intellectual disability

Anna Lindstrand, Marlene Ek, Malin Kvarnung, Britt-Marie Anderlid, Erik Bjoerck, Jonas Carlsten, Jesper Eisfeldt, Giedre Grigelioniene, Peter Gustavsson, Anna Hammarsjoe, Hafdis T. Helgadottir, Maritta Hellstroem-Pigg, Ekaterina Kuchinskaya, Kristina Lagerstedt-Robinson, Lars-Ake Levin, Agne Lieden, Hillevi Lindeloef, Helena Malmgren, Daniel Nilsson, Eva Svensson, Martin Paucar, Ellika Sahlin, Bianca Tesi, Emma Tham, Johanna Winberg, Max Winerdal, Josephine Wincent, Maria Johansson Soller, Maria Pettersson, Ann Nordgren

Summary: This study compared the results of different diagnostic approaches in individuals with intellectual disability/neurodevelopmental disorders and found that genome sequencing (GS) performed as a first-line test had a higher diagnostic yield of 35% compared to other strategies. GS has the potential to replace traditional methods such as chromosomal microarray (CMA) and FMR1 analysis, offering advantages in terms of diagnostic time and cost.

GENETICS IN MEDICINE (2022)

Article Clinical Neurology

Thirty novel sequence variants impacting human intracranial volume

Muhammad Sulaman Nawaz, Gudmundur Einarsson, Mariana Bustamante, Rosa S. Gisladottir, G. Bragi Walters, Gudrun A. Jonsdottir, Astros Th Skuladottir, Gyda Bjornsdottir, Sigurdur H. Magnusson, Bergrun Asbjornsdottir, Unnur Unnsteinsdottir, Engilbert Sigurdsson, Palmi Jonsson, Vala Kolbrun Palmadottir, Sigurjon A. Gudjonsson, Gisli H. Halldorsson, Egil Ferkingstad, Ingileif Jonsdottir, Gudmar Thorleifsson, Hilma Holm, Unnur Thorsteinsdottir, Patrick Sulem, Daniel F. Gudbjartsson, Hreinn Stefansson, Thorgeir E. Thorgeirsson, Magnus O. Ulfarsson, Kari Stefansson

Summary: Intracranial volume is heritable and associated with cognitive traits and neurological disorders. This study identified genetic variants and genes that mediate the effect of these variants on intracranial volume. Additionally, intracranial volume is genetically correlated with volumes of different brain regions, cognitive abilities, and neurological traits. Importantly, differences in intracranial volume were observed in Parkinson's disease and attention deficit hyperactivity disorder cases.

BRAIN COMMUNICATIONS (2022)

Article Oncology

Unravelling genetic variants of a swedish family with high risk of prostate cancer

Serena Barilla, Annika Lindblom, Hafdis T. Helgadottir

Summary: This study identified rare and common genetic variants associated with the development of prostate cancer through whole-genome sequencing. The researchers found 38 high-risk gene variants and 332 low-risk gene variants, which can be used for targeted screening in high-risk families.

HEREDITARY CANCER IN CLINICAL PRACTICE (2022)

Article Biotechnology & Applied Microbiology

Whole genome DNA sequencing provides an atlas of somatic mutagenesis in healthy human cells and identifies a tumor-prone cell type

Irene Franco, Hafdis T. Helgadottir, Aldo Moggio, Malin Larsson, Peter Vrtacnik, Anna Johansson, Nina Norgren, Par Lundin, David Mas-Ponte, Johan Nordstrom, Torbjorn Lundgren, Peter Stenvinkel, Lars Wennberg, Fran Supek, Maria Eriksson

GENOME BIOLOGY (2019)

No Data Available